MmuINT0110521 @ mm10
Intron Retention
Gene
ENSMUSG00000002393 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:MGI Symbol;Acc:MGI:1352453]
Coordinates
chr8:71374127-71376273:-
Coord C1 exon
chr8:71375749-71376273
Coord A exon
chr8:71374755-71375748
Coord C2 exon
chr8:71374127-71374754
Length
994 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GTCATCCCTGCTTCCTGCAGATG
3' ss Score
10.76
Exon sequences
Seq C1 exon
CCGTGCAGCGAGGCCGCATCCCGCATGCGCTCCCCGGTCCAGCGGCCTGCAGTCCCCCGGGCGCGACGGGCGTCGAACCTTTCACGGGGCCGCCAGTGTCCGAGCTGATTGCGCAGCTGCTGCGTGCTGAGCCCTACCCCGCGGCCGGACGCTTTGGTGGCGGCGGCGCTGTACTGGGCATCGACAACGTGTGCGAGTTGGCGGCACGCCTGCTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGTGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCGCTGCATACGGCACCGCTGCTGGCCGCCGCGGGGTTGCATGCCGCGCCCATGGCAGCCGAGCGGGCCGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCGGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
Seq A exon
GTGAGCCGCCCCGCCCCATCAGAGCCCCACCTAAACACAGGCCACGCCTCCAAGCAGACTTCACTGCCACACACCAGACTCCCAACTGGACCAAAGGCCACTCCCTCAGACTGACCACGCCCCCATTGTCATTGCCCCAACTCAGCCTCAGGCAACCAGGTCATCCCCTTCCCTCTCTAGCCAACCTGGGCCATTCTCCAGCCAGACTGAGAGGACACTGACTCAGGCCACACCTTTTTGACACAGGTGACTCCGCTGTTAGACCTGGCTTGCTGCTCTCTGGCCTAACACTACCCCCAGGCCCCTACTCAGACACTGCTCCAGGCCATGTACCAAGCTGCCTGAGACCATACTCTGCATCCTACGCCTGATGTCACTCCATCATGCCCTCAAACTAATCCAGACCTCTGAGCTCCTGCCTCTGTTCTGTTCTGTTCCATATTCCACAGGGCCATGCCGCTTGGGTGCAGGATACAGCTAATGACCCTAGGTTTTATCCCAGGCCACACCTCAGGGGCCATTCTCTCTGATGACATGCCTTTGCTGCGGTAGGGGAAGACAGTACAACATCTTAGAGACCCTGAGATGTGAGCTGAGGAGAGACCAGCGAAATCTAGGACTGTACTGATTACAAATCCAGACCTTGTCTAGTCCCCTCCTGAGAGAGCAAAAGGGGTATCTGGGCACTGCTTTGAAGAGAGGCCTTCCGGTGGGCGGGGCTGAGGGAGATCCTGGCCTGGAGGCTACTCCCACAAAGTGGTGCCGAGTAGCAATGCCCCTCCTATTGGGCAGGGCCTTCGTTTAGCCATGCATGGAGCAGCAGTTCTTGAGCCTGTCCCTGCAGTTGAATACGGCTAGTCTGGTGGACACAGACTTACATACGCTCTTACCTCTGTTCATGCTCGCCTCCGGTGGCATCCTTATCCTCTCCCCTGTAGGCCTCTTGCCCTGTTTCCCCAGCCGTGACTGCCCTTGTCATCCCTGCTTCCTGCAG
Seq C2 exon
ATGCCTGTGGCCTTTCTGACCCAGCCCATGTGGAGAGCCTGCAGGAGAAGGCACAGGTGGCCCTCACCGAGTATGTGCGTGCCCAGTACCCATCGCAGCCCCAGCGCTTTGGGCGTCTGCTGCTGCGGCTGCCAGCCCTGCGTGCTGTGCCCGCATCCCTCATCTCCCAGCTCTTCTTCATGCGCCTGGTGGGCAAGACACCCATCGAGACCCTCATCCGGGACATGCTTCTGTCAGGGAGCACCTTTAACTGGCCCTATGGCTCGGGCTAGTGATAGTCACCTTCCAGGACATACATGGAAACTGGGGCCTTGTGGGGACCCTGGGGATCAGGGCCCCAGCTTCTCTTTTGAGACTGATTTCTTTTTTTAAAGACTGTGAAATGTTTGTTTTGTTTTATTTTTTAAATAATCATGAAACCAAAAAGATTTGGATCTCCCAGGCCTTGTCCTGGCAGACCTTCAACAGTCTGGAGCCAGCATGCTGATGCCTCTGGTGTCATGGGTATCTGGAAAGGCCACTGCAGCTAGGCAGGAGTACTATGGGCCAGGAGGATCCCCTGGATACATGGTCCACGGAGGGCACCATGGGATGATGAAAACCTGGCCAATAATAAAGGTATTCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002393:ENSMUST00000002466:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(65.0=67.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.4=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAGCAGGTGGACAAG
R:
GCCAGTTAAAGGTGCTCCCTG
Band lengths:
343-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types