MmuINT0110521 @ mm9
Intron Retention
Gene
ENSMUSG00000002393 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:MGI Symbol;Acc:MGI:1352453]
Coordinates
chr8:73898018-73900172:-
Coord C1 exon
chr8:73899648-73900172
Coord A exon
chr8:73898654-73899647
Coord C2 exon
chr8:73898018-73898653
Length
994 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GTCATCCCTGCTTCCTGCAGATG
3' ss Score
10.76
Exon sequences
Seq C1 exon
CCGTGCAGCGAGGCCGCATCCCGCATGCGCTCCCCGGTCCAGCGGCCTGCAGTCCCCCGGGCGCGACGGGCGTCGAACCTTTCACGGGGCCGCCAGTGTCCGAGCTGATTGCGCAGCTGCTGCGTGCTGAGCCCTACCCCGCGGCCGGACGCTTTGGTGGCGGCGGCGCTGTACTGGGCATCGACAACGTGTGCGAGTTGGCGGCACGCCTGCTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGTGAGCTCTTCGTGCTGAACGCGGCGCAGGCGGCGCTGCCGCTGCATACGGCACCGCTGCTGGCCGCCGCGGGGTTGCATGCCGCGCCCATGGCAGCCGAGCGGGCCGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCGGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
Seq A exon
GTGAGCCGCCCCGCCCCATCAGAGCCCCACCTAAACACAGGCCACGCCTCCAAGCAGACTTCACTGCCACACACCAGACTCCCAACTGGACCAAAGGCCACTCCCTCAGACTGACCACGCCCCCATTGTCATTGCCCCAACTCAGCCTCAGGCAACCAGGTCATCCCCTTCCCTCTCTAGCCAACCTGGGCCATTCTCCAGCCAGACTGAGAGGACACTGACTCAGGCCACACCTTTTTGACACAGGTGACTCCGCTGTTAGACCTGGCTTGCTGCTCTCTGGCCTAACACTACCCCCAGGCCCCTACTCAGACACTGCTCCAGGCCATGTACCAAGCTGCCTGAGACCATACTCTGCATCCTACGCCTGATGTCACTCCATCATGCCCTCAAACTAATCCAGACCTCTGAGCTCCTGCCTCTGTTCTGTTCTGTTCCATATTCCACAGGGCCATGCCGCTTGGGTGCAGGATACAGCTAATGACCCTAGGTTTTATCCCAGGCCACACCTCAGGGGCCATTCTCTCTGATGACATGCCTTTGCTGCGGTAGGGGAAGACAGTACAACATCTTAGAGACCCTGAGATGTGAGCTGAGGAGAGACCAGCGAAATCTAGGACTGTACTGATTACAAATCCAGACCTTGTCTAGTCCCCTCCTGAGAGAGCAAAAGGGGTATCTGGGCACTGCTTTGAAGAGAGGCCTTCCGGTGGGCGGGGCTGAGGGAGATCCTGGCCTGGAGGCTACTCCCACAAAGTGGTGCCGAGTAGCAATGCCCCTCCTATTGGGCAGGGCCTTCGTTTAGCCATGCATGGAGCAGCAGTTCTTGAGCCTGTCCCTGCAGTTGAATACGGCTAGTCTGGTGGACACAGACTTACATACGCTCTTACCTCTGTTCATGCTCGCCTCCGGTGGCATCCTTATCCTCTCCCCTGTAGGCCTCTTGCCCTGTTTCCCCAGCCGTGACTGCCCTTGTCATCCCTGCTTCCTGCAG
Seq C2 exon
ATGCCTGTGGCCTTTCTGACCCAGCCCATGTGGAGAGCCTGCAGGAGAAGGCACAGGTGGCCCTCACCGAGTATGTGCGTGCCCAGTACCCATCGCAGCCCCAGCGCTTTGGGCGTCTGCTGCTGCGGCTGCCAGCCCTGCGTGCTGTGCCCGCATCCCTCATCTCCCAGCTCTTCTTCATGCGCCTGGTGGGCAAGACACCCATCGAGACCCTCATCCGGGACATGCTTCTGTCAGGGAGCACCTTTAACTGGCCCTATGGCTCGGGCTAGTGATAGTCACCTTCCAGGACATACATGGAAACTGGGGCCTTGTGGGGACCCTGGGGATCAGGGCCCCAGCTTCTCTTTTGAGACTGATTTCTTTTTTTAAAGACTGTGAAATGTTTGTTTTGTTTTATTTTTTAAATAATCATGAAACCAAAAAGATTTGGATCTCCCAGGCCTTGTCCTGGCAGACCTTCAACAGTCTGGAGCCAGCATGCTGATGCCTCTGGTGTCATGGGTATCTGGAAAGGCCACTGCAGCTAGGCAGGAGTACTATGGGCCAGGAGGATCCCCTGGATACATGGTCCACGGAGGGCACCATGGGATGATGAAAACCTGGCCAATAATAAAGGTATTCCCTTACTTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002393-Nr2f6:NM_010150:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(65.0=67.6)
A:
NA
C2:
PF0010425=Hormone_recep=PD(34.4=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGGAGCAGGTGGACAAG
R:
GCCAGTTAAAGGTGCTCCCTG
Band lengths:
343-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: