HsaINT0124956 @ hg38
Intron Retention
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204442526-204443597:-
Coord C1 exon
chr1:204443417-204443597
Coord A exon
chr1:204442634-204443416
Coord C2 exon
chr1:204442526-204442633
Length
783 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ACTCCTCCCCTTCTTTCCAGGGA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTTACTGAAGGACGGCCTCAAGGACTCTCAGTTCAGCATCCGCTACCAGTATCTGCTGGCAGCCTTACTGTGCTGCTGTGGCAAGGGGCTGAGAGAAGAGTTTAACCGCCAGTGCTGGCTTGTCAATGCCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCAGCCCCATCTGCAAGGCAG
Seq A exon
GTTAGTGGGGTGAGGCTGCCCCTACCCATTTCTCATCCAGGGCTTTGGCAGCCAGTTTCTTCTTAGGAATCCTGAACAACAAGATTCCACGTGACGATTTTTGATTTTGGAGCGGGGAGCAGCTGACTCTGGAAACTAGGCCGTAAACAGGCAGTCCACAAGCTGGATACAGCCCGTGGATGTGTTTTGTTTGTCCTGTAAAATATTGAAATTTATTTAGCTGTTTGTTTTAAAGGCTAAGCACAGTTGTGTAAGTTGTTCATTGCACAAGAGCACTCAGCCAGAAGGGGCAAGTGAGGGCTGAAATCCAGCCATATTTTGTTCACCATGCTGTGACCCATGGCTCAGGCCTGATGCCACCCAGAGAGGACACCTTTATCTGTTTGTACGAAGACATTGTAACCAGCCAGCAGTGTTCCTGGTTAACGACATTTAAAAATTGAGAGATTTTGTATCAACGTCCAGATTGTTAGCTTTTCTTGGCAGAAGCCTAAATAGCTCTTCCCCCTTGAGAGACAGCCTGCCCTCTCTGTGCACTGTGGCCTGCTTCATGCTGTTCTGCCATCTGCTCCCCTCTAGAGCTATTTGGTCTTGCTGTTAGCGTACAGTCCCAGGCTGGGGTGTAGGGGGTCCTCCTCCTTAAGGATCTTCTGGAGGGTGTCCACACTTCTCAGGGGGTGGTTTTCATACCGACTACTACGGAGAACCCACCCCTGGGAGAGGTCTGGTTCTCAGTATGGACCCTCCATTTCACCCCTGCTGTACTCCTCCCCTTCTTTCCAG
Seq C2 exon
GGAATCCTCCGCACGGGCCTGGAGGAGGTGAAGCAGTTCTTTGCCCTCAATGGCTCGTGCCGCTTGCCACTCAGCCCCAGTCTGCTGGTTAAGGGAATTGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056:ENST00000367187:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAAGGACGGCCTCAAGG
R:
CTGGGCACAATTCCCTTAACCA
Band lengths:
286-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development