RnoINT0111271 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49893905-49894906:+
Coord C1 exon
chr13:49893905-49894085
Coord A exon
chr13:49894086-49894798
Coord C2 exon
chr13:49894799-49894906
Length
713 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTCCCCACTCCCTCTGAAGGGC
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTTACTGAAGGACAGCCTCAAGGACTCCCAGTTCAGCATCCGTTACCAATACCTGCTAGCGGCCCTGCTGTGCTGCTGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAATACCCTGGCCAAACTGGCCCAGCAGGTCCGAGAGGCCACCCCATCTGCACGCCAG
Seq A exon
GTGAGTGGGCAAGGCTGGTTCTCCCGGTCCCTGTGTCTGACTTGAAGCTTGTGTAAGCAGGGGTTGACGTCTCCAGGGCATCCTGAGCAGCCGGACGGAAAATGACTGCCTCCTATTTAAAAACTAGAAAGAGGTGGCTGTAACCCGCAGGCCTAAGCAGACAGTCCCCACGATGGCCGTAGTCCATGGATGTGTTTTGTCTGGCTTATAAACTATTAGAGTTTTGACTTAGCTGTTTGCCTTAAAGGTTGGGCGTACGTGTGCGTGCTGTCCATTGCATGGGCACATTCAGCAGGTGAGAGCTAGGATTCAGTCTCTTCTCTGTGGGGAACCGTGGCTCAGGACTGAGACAGGCGACAGAAAGGGACACCAGCAGTGCTTCCCACATTGAAAGCTTGAGAGATTTCTATATATAAGTCTGTCAGCTTTTCTAAGCAAAGTAGGATTTTACCACTTGGGATGTTCCTGCCCTCCGTTCTATGCCTTCCCATGTTCTCCTGGGTGTATTGCCTCTCTAGAAACTGAGGTGAACTTCTTGTACATTGAGCAAAGTCTGGGACCCAAGTGGGTGGTCGTTCTTCCCAAGAATTTCTCAGAAGTCGTCCCCGTTATTCAGACACAGGACTAGGCACCTTGCTCTGGGAGACACCTGGCTCTGAGTGGAGCCTCTGGGCCTCTCACCTCATCCCTGCTCTTCCCCACTCCCTCTGAAG
Seq C2 exon
GGCATCCTTCGTGCGGGCTTGGAGGAGGTGAGGCAGTTCTTTGCTCTCAATGGTTCGTGCCGTCTGCCGCTTAGCCCCAGTCTGCTGGTGAAAGGCATTGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGACAGCCTCAAGGACT
R:
CACAATGCCTTTCACCAGCAG
Band lengths:
278-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]