GgaINT0141666 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1736872-1737231:-
Coord C1 exon
chr26:1737051-1737231
Coord A exon
chr26:1736980-1737050
Coord C2 exon
chr26:1736872-1736979
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCAATGTCCCTCCCCACAGGGC
3' ss Score
11.92
Exon sequences
Seq C1 exon
GCTGCTGAAGGATGGCCTGAAGGACTCCCAGTTCAGCATCCGCTACCAGTACCTGTTGGCAGCTCTGCTGTGCTGCTGTGGGAAGGGGCTGCGGGAGGAGTTTGACCGGCAGTGCCTGCTGGTCAACACGTTGGCCAGGCTGGCCCAGCAAGTGAGGGACGCCGCGCCATCCGCACGCCAG
Seq A exon
GTGGGTGTTGGGCTCTGCGGGGTCTCACAGGGTCCAGCCAGGTCTCAGCCACCCAATGTCCCTCCCCACAG
Seq C2 exon
GGCATCCTGCGTGAGGGGCTGGAGGAGGTGAAGCAGTTCTTCAAGGCTAACGGGTCGTGCCGACTGCCGCTCAGCCCCAGCCTGCTGGTGAAGGGGATCGTGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACCTGTTGGCAGCTCTG
R:
AGAACTGCTTCACCTCCTCCA
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]