MmuINT0119712 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134987258-134988245:+
Coord C1 exon
chr1:134987258-134987438
Coord A exon
chr1:134987439-134988137
Coord C2 exon
chr1:134988138-134988245
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCCCCCACTCCCTCTGAAGGGC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTTACTGAAGGACAGCCTCAAGGACTCTCAGTTCAGTATCCGCTACCAATACCTGCTAGCAGCCCTGCTGTGCTGCTGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAACACCCTGGCCAAACTGGCCCAGCAGGTCCGAGAGGCCACCCCATCCGCCCGCCAG
Seq A exon
GTGAGTGGGCAAGGCTGGCTCTCCCTGTCCCTGTTTCTAACTGAGGCTTATGTAACCAGGAGTTTTACACCTTGCAAGTGTCCCGTTTAGAAACTAGAAAGAGGTGGCTGTGACCTGCAGGCCTAAGCAGATAGTCCCCAAGCTGGCCACAGCTCATGAATGTGCTTTGTTTGGCTTGGTTTTGACTTAGCCTTAAAGGTTAGACATATTTGTATATGCTGTCTGTTGCATAGACACATTCAACAGGTGTGGGCTAGGATTCAGTCACTTCTTTGTGGGGAACTGTGTCTCAGGGCTGAGACAGGTGACAGAAAGGGACACTGTGCCACACCAGCAGTGCTGCCGATTTCTGACATTTAAAACTTGAGAGGTTTCCATGTGTAAGTCTGGGTTGTCAGCATTTCTAAGCAAAGCCCAGATAGGATTTTACCCCTTGGGATATTCTTGCCCTCCATCCTATGCCTGCTTTCTTATGCCCTCCTGGAAGGCTTGCCTCTCTAGATAGACACTCGGGTGTGCTTTTGTGCACTGAACAAGTCTGGGACCCAAGTGGGTGATTGTGCTTCCCAAGAGTTTCTCAGAAGTTGTCCCTGTTACTCAGGCACAGGACTAGGTACCTTCCTCTGGGAGACACCTGGCTCTGAGTGGAGCCTCTGGGCCTCTCACCTCACCCCTGCTTTTCCCCCACTCCCTCTGAAG
Seq C2 exon
GGCATCCTTCGTGTGGGCTTGGAGGAGGTGAAGCAGTTCTTTGCCCTCAATGGTTCGTGCCGTCTGCCGCTCAGTCCCAGTCTCCTGGTGAAGGGCATCGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGACAGCCTCAAGGACT
R:
CACGATGCCCTTCACCAGG
Band lengths:
278-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: