HsaINT0124956 @ hg19
Intron Retention
Gene
ENSG00000133056 | PIK3C2B
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:HGNC Symbol;Acc:8972]
Coordinates
chr1:204411654-204412725:-
Coord C1 exon
chr1:204412545-204412725
Coord A exon
chr1:204411762-204412544
Coord C2 exon
chr1:204411654-204411761
Length
783 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ACTCCTCCCCTTCTTTCCAGGGA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTTACTGAAGGACGGCCTCAAGGACTCTCAGTTCAGCATCCGCTACCAGTATCTGCTGGCAGCCTTACTGTGCTGCTGTGGCAAGGGGCTGAGAGAAGAGTTTAACCGCCAGTGCTGGCTTGTCAATGCCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCAGCCCCATCTGCAAGGCAG
Seq A exon
GTTAGTGGGGTGAGGCTGCCCCTACCCATTTCTCATCCAGGGCTTTGGCAGCCAGTTTCTTCTTAGGAATCCTGAACAACAAGATTCCACGTGACGATTTTTGATTTTGGAGCGGGGAGCAGCTGACTCTGGAAACTAGGCCGTAAACAGGCAGTCCACAAGCTGGATACAGCCCGTGGATGTGTTTTGTTTGTCCTGTAAAATATTGAAATTTATTTAGCTGTTTGTTTTAAAGGCTAAGCACAGTTGTGTAAGTTGTTCATTGCACAAGAGCACTCAGCCAGAAGGGGCAAGTGAGGGCTGAAATCCAGCCATATTTTGTTCACCATGCTGTGACCCATGGCTCAGGCCTGATGCCACCCAGAGAGGACACCTTTATCTGTTTGTACGAAGACATTGTAACCAGCCAGCAGTGTTCCTGGTTAACGACATTTAAAAATTGAGAGATTTTGTATCAACGTCCAGATTGTTAGCTTTTCTTGGCAGAAGCCTAAATAGCTCTTCCCCCTTGAGAGACAGCCTGCCCTCTCTGTGCACTGTGGCCTGCTTCATGCTGTTCTGCCATCTGCTCCCCTCTAGAGCTATTTGGTCTTGCTGTTAGCGTACAGTCCCAGGCTGGGGTGTAGGGGGTCCTCCTCCTTAAGGATCTTCTGGAGGGTGTCCACACTTCTCAGGGGGTGGTTTTCATACCGACTACTACGGAGAACCCACCCCTGGGAGAGGTCTGGTTCTCAGTATGGACCCTCCATTTCACCCCTGCTGTACTCCTCCCCTTCTTTCCAG
Seq C2 exon
GGAATCCTCCGCACGGGCCTGGAGGAGGTGAAGCAGTTCTTTGCCCTCAATGGCTCGTGCCGCTTGCCACTCAGCCCCAGTCTGCTGGTTAAGGGAATTGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-PIK3C2B:NM_002646:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGAAGGACGGCCTCAAGG
R:
CTGGGCACAATTCCCTTAACCA
Band lengths:
286-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)