BtaINT0111678 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2003903-2004898:-
Coord C1 exon
chr16:2004718-2004898
Coord A exon
chr16:2004011-2004717
Coord C2 exon
chr16:2003903-2004010
Length
707 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCACCCCGCTCCCCCCACAGGGC
3' ss Score
12.12
Exon sequences
Seq C1 exon
GTTGCTGAAGGACGGCCTCAAAGACTCTCAGTTCAGCATCCGCTACCAGTACCTGCTGGCCGCCTTGTTGTGTTGCTGTGGCAAGGGGCTGAGAGAGGAGTTTAACCGCCAGTGCTGGCTTGTTAATACCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCTGCCCCGTCTGCACGGCAG
Seq A exon
GTGAGGAGGGCGAGGCTGCCTCTGCCCCATTCTGGTTCTGGGCCTCTGCAGCCAATTGTAACTTCTCAGGCCTCCTGACCAGCAGGATGGCACTTGACCATCCCTGGTGAGGGGCTGGAAGGAGGCGATTCTCTAATCTACAGGCTACAAACCATGGGAGTGTTTTCTTTGGCTTGCTAAGTATTAAAATGTCTATTTAACTGTTTGCCTTAAAGGCTGAGCCAAGTTGTATCAGTGCTTCACCGCACAAGAGCGCCCAGCCAGAGGGGCCGAGGGAGGGCGAAAACCCAGTCATCTTGTCACTGCGCAGTGAGCTGTCAGGACCACCAGAGGGGGCACTTTGTGTTTGTACAACGGGCCTGTATTAGGCCAATATTAGGGATCCTGGTTGCTAACCTTTAAAAATTGGGAGATGATGAAGTCTAGATTATTGGCTTCCTCTGGCCACGGCCCAAGGGACAGCTCCTCCTTGGCCTGCGGCCCCCGTGAGCCGTTCTGCCATTCGCTCCGTCTCTGCAGGTGTGGGCTGTGGCCTGGCACTGGCCCGGGCAGGGATGTGGGGGTGGTTTTCCTTCATCGTGGTCTGCAGGAGGCTGTCCACACCTCTCTGGTGATTATTTCCATACCAGCTGCTACTGGGCACCCGCCCGGGGAGACCTGACTCCGGTGGAGCCTCCGGCCCTCACCCCACCCCGCTCCCCCCACAG
Seq C2 exon
GGCATCCTCCGTGCCGGCCTGGAGGAGGTGGAGCAGTTCTTCGTCCTCAATGGCTCCTGCCGCCTGCCCCTCAGCCCCAGTCTGCTGGTTAAGGGCGTCGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.1=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGACGGCCTCAAAGAC
R:
CACGACGCCCTTAACCAGC
Band lengths:
279-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development