HsaINT0125001 @ hg19
Intron Retention
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18793363-18801352:+
Coord C1 exon
chr12:18793363-18793488
Coord A exon
chr12:18793489-18800809
Coord C2 exon
chr12:18800810-18801352
Length
7321 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATTATTTTCTCCGTTTTTAGGTA
3' ss Score
11.89
Exon sequences
Seq C1 exon
CATCTCCCAGATGGCTCTGCGCCCAGTGCACATGTTGAATTTTATCTTTTACCATATCCCAGTGAAGTTCGTAGGAGGAAAACAAAATCTGTTCCAAAATGTACGGACCCCACTTACAATGAAATT
Seq A exon
GTAAGTATAAGTCACCTTTTGTCCAGTCATTTTGTATTTTTCTTACCATTTTTCAGCTTAACAACCAAATATGGAAAATTTGCAGTAATTGGCAGCATTATTTCATAAAGGAAAGATATTTTCCAAAGTAGTCGCAGTATGCTGATCACTCTTCTAGATGCTATGGGCACTGGAAAATACAGATACTGCTTTCAAAGCTCTTATAAACCAATTTGCAAGTATGGCTAACCTCCAGCAAGAGCCCAAGACTTGTTTTGCATACTAACTTTATTCCTGACTTCATCTTATTTTCTCTAACCTTATTCTCCTTTACCTGATTTTCCTTACCTAATAATTTTATCATATACTACCTTGGGTATAACAGTAAATCTCATAAAATCTCTTTTGAAAAACTAAAAAAATAAATACAAAATACAAATGGAAGTTAATGTATATTATAAATAGCTCTCTAATTTATTTGTAATGTGCAATTCCCTAACTTCTTTCTAAGGCAAGCCCCTACATTTATTCTCTTGATTCCATCCTTTCCCATCTCCTCTGCACCTTGCTCAGCTGCTTATTTGTGTTCCTTTTCTTATGGCTGTCTCATCCACAGGATCCTCCACTCAGAAATATTAAAAAACAAAAACAAAAACTCCCCAACTCAGGCTTGCTAAGCAAATTTTCTTTCCCTCACTATCACCTCCAAACTTATCCAAAATTAACCCACATGATCTGCTTTCCCTTCATCTCTCCCTTTCACCCTTGAATGCTTTGCAATGTGGATTCTGACCTTTATTGATAGTACTTTATTCAAGGGGCATCAATAGACTCCTAACTGCTAAATCCAAAGAGCCCTCAGGCTCTCGTGCCTGGATCAGTTATACAGCAGCACTACTGACCACAGCCCCATTCCTGAAACCTCCGTTTTGCTTTTTGAGTTGTACCTTTTCTTAATTCTCTTCCATTTTCTCTACCACTTATTTCTCTACCACTTATTTCCATTTCTCTACCACCTCTCTCATTTTCCTTCATTGTTATTCTTTCTCTTAAAATATTATTGTTTACTGAAGTCACATGATCCATCCTCATCTCCTCTTCCTGTACATACTCTCACATTTATCTTGTGGATCAACAAAGTTTTATTTATCACCTATAGGTAGGTTGCATCTGAATTTACTCCTAAAACCCTGGCTTCTCTCTCTCAAGCTTTTTTTTTTTTTTTTTTTTGAGATGGAGCCCTTCACTCTGTGTCTAGCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACCACAACCTCCACCTCCCAGATTCAAGCAATTCTCCTGTTTAAGCCACCCGAGTAACTGAGATTACAAGCTCCCACCACCACATCCAGCTAATTTTTGTATTTTTAGCAGAGACGGGGTTTTGCCGTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCGCCTCAGCCTCCCAAAATGTTGGGATTACAGGCGTGAGCCACCATGCCCGGCCTCTGTCACACTTCTACCTGATTACTGGGGAGCTCCATCTGAATGTCTCATAGGCACTTTTAGACCAGGCTTTCCTCCATTCATTCTTTCTTTTATAGATGGTACCTTTGGGGTCGAAACTAAGAAACTCTTTGTCTAGCACTGAGTCTCAAAGATTTTCTCTTATAGTTTTTTCTAAAAGTTGTATAGCTTTACATTTTACATTTAAGTACATTACCCATTTTGAGTTAAATTTTTAATAAAATGTGATGTTTAAGTCAAGGCTCTTTATTTCCCCACTGTGGATACCAATTATTCCAGTACTATTTGTTGAAAAGGCAATTCTTCCTCCACTGAATTTCTTTTGCACGTTTGTCAAAAATCACTTGGGAATATTTGTGTTCTTATACTCTTTTTGTTATCCCATACTTAGCCATATTTTCAGATCACATCAGACAGCTTGTCATTCCCTGAATGGACTGTAGGATTTTGTGATAGAACTCATGCCACCATTCACCTCTCTCTGCCCTTCTCTGCCTGCTTTGAGACTGACCTCAGATGTGAACTCTGCAAACACTGTCACCTCGTGGACTCACACCACACTTATAATCCTTTCTTTAGTCCTACACGGTTTTTCTTCTAGTATATCATAAACTTCTCCAGGGCGGGTTAAATGTCTTATCCTTTTTAATACTTTTAACACTTAGTTACCTCTAAAATGATGTGTAATAAATATTCGGGGCAGTTTTATAAGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAAATGTAAATACATGTATATACTGCATATATATATAGAGAGAGAGAGATTCTCTAAACTGGTAAGGAAAAATATTTTGACACTATTATTTGTCATGATGTCAACAGTGAGAAGCATACACTTCCCAACAATATATCACTGTTTCTTTTCATACTTTTTGAGTACAAGTCTCCATGCCTCACTATCAAGAAACTTCTCAGACCCTGTGTTAGGCATAAGCATTTTCAGTATAAGAAAACATATAATAACAAGAAACCACTAACAATTCAGAACAATTTAAATAAACTTGTGTTTTATTTCAAGCTTTATGTATTATAAGAAAACAGTAGTAAATTATATTCATGGAAAATTATTTTATAATTCTTGCTGTGCACATAACTTTTCTGAGGGCTTGCAATACCTAGGTCCTCACACATCCATAACCCACTGATTAAAACTCACTACAAATCTTTCTCAATTGATCTATACTTGTAGCATGAATAGACACTTTATACTTTGGACACATTTTAAATTGCTTCGAAAGCCATGGTCCATGCATAGCCAATTCCGATGAGAACATAGTCCAATCAAGCAGAAATTTGAAGTAGTGTGTGTATAAGTGATGATTTTAGTAGTAGTCATTAGGACAGTAAGAGGTTTCTAATCATATAAACAATTCTGGCAAAGAAGCTGGGTGAATTCCAAGAGCCAAAAGGAAAAAAAGGCAACAACGGTTAATTTAATTTTTTTCATTCTATGCCTGTATCAACACAACAAGAATATTTATAAGAAATGCAAAGAAGCACACTAGATGTTAACTCTGATTTTACTGTCTCTTGCCCTCAGTTGTGATGTAGGATCCCATCTTTGTGTCAAACTCCTCGATCACTTGTGTGCAACCTCAAGAGCACCTTACTAGATGTCTTTACCAATAAGCCCAGTGCTTACTAGAGAGCCCAGTGAGTTATCACAGGGCATCTACCTTGTTTTAAACTTTTCCTCCACTTCCGCCGCCTCACTGAGTACTGCTGCATCAACCACTCACCACAGCTGGGATTTCTCAAACTGTAAAAGCCGTGTACTGTTCTTGAAGTGGGAGAGGATGACCTCACTCTCCTCTTTATATAAATCTCTCAGAGGAGTACAAAGAAGATATTACACTGCATACCAATGTCTTACAAAGCCTTTTGTGAAAATAGTTCTTTTTATTTTTATTCCTATCCTCCTTTCTCCTTAATATCCAGAGATGAGAGGGGCTGGGTCGGGGACACAGAAAAGTGACAGAGTCTCCACCCTTCCCATACTAAGGCTTTGATGCAGGGCCAAGCTTGTCTATTTGACACTTCGCAGAGTGAGCCCCAATAGGCTTCATCAGCAGTCTCCCTGAAAACCCCTGTCATGTACAAATCCCAGTGATAGGCATGGCTGGTCTCAAGATGGGTCTGGGGCTGGGGGTGTGAGTGCTCAGGGAACTGCCATACAGCTTGAAGAAGCAGAGGTGGGATTCCGGGCTCCAAAGCCTCTTTCCACGCCACTACTTTTGCCATCTTCTTAAAAACCATCATTTTTCACACAATTCATTAGAAATACAGAATTTCTACCCTATGACAGAATTACATGCTTATAATCAATATATTTTGTATATTGTAACCTTTTCTTATATATTATTCTGTTGTAAGGTGTAAAGGGAAAATTAGAAAGAACAGAACAGGAACGTTCTATGCATTTTACATCCCTTAAAATCTCCTGCAGAATATACAGTGATTACTTAGCACAATGCCAAGTATATGGCACACTCAGTAAGCTATAGTTATTGTTATCTGTGTTATAATATTATTGCAATTTCAACATGATGAAAATTGTATTTGTAAGTGAAGACAATGTGACCCAGAGGTTACACAACTAGATGTCAAGCCCAGAACTGCCTGATTCCAAAGCTCATGGTTACCGCACTACACTATGCTGTTATTCCTACCTGTCTCCTCCCACGCAGTACCCCTGTTCTCGCTTTTGAACTCTTTCTTTCATTATCCTGCCTCCTCTACCACTTCCCACAAGCACTAGAGACACTTCAGTTCCTATCTTATTGTCCTCTCATTTCAATCATGAAAATACACTTTAGAATTATTTACTAGACCCTTGTGTCAACTAATGTTCAGTAAATTCTTGGAATGTTCAGTATATGTTAATAGATATTAATTACCTTAAGTGTTTTCTATTAGACGTAATAATTCCAAACCCACACATTTAGTTATTTGTCAGAAGGTAGTAAAGACTTAACTCATGCCTATAGGTAAAAATTATTAGAAAAAGAAATTAAAAGAGCTATTTATTTTTGGTTCTGAGTATGTACCAGAACCATTTTTTTTTGTTCTGAGTATGCAGAATATATATTAAATCCTTTGACGAAAAGGTCTCAAAGAATATAATCATCTCTGTACTTCGCTAACATTAGCCACTAATTATTCTTTGCTCAGTTGAAAAGAGTACTTACTATTTAACAACATCATGGATGCACCAAAGCAATCAGAATAGATATTTATCATCTATAATGTGCAATGATTACAGGTTTATAAAACTTCAGTCACTTTTAAGAAAATAACTTTTCTTAATGAAGCAGAGGGAAAAAATATATGAAGTAATAAAAACTTTGGAAGTTCAAATGTTTGTATTTTAACCAGGAAAGCAATTAACTCCTAAAGTCATTTCTTGAAGCTTTCAGCTTGCTAAATACCTGGAAGACTCAATTCTGTCTGGAAGGGTTTTCTCCAGTCAATTGATGCAAAATACTAAGAAACAACTGTTCCTTTTTGTGTATTTGATGGATCTTTTTCAGCTATAATTTACTGGTGTCTAATATGTTCCAGGCTTTGTAGCAAGGCTTATATTCATTATCTCATTTCTTCCTCCCTATAATGCTAAAAGGTAAGGATTATTATCATCATTATACAAATGAGAAAACACACAGTTGACAACAGATTCATGAAAATATAAATTATTGATATGTTTTTTAAAAACTTACAATTTATGACTTATTCATGCAATTCACAGAGTCCTTAGCCAGACTTCCCCATTTTTCTGCATCATATACAGTCACACTTTGAGGGTTCCTTTCTGTTTTCTCTGTAAAATAAGAGAGGAGTTCATCAGCTGAACATGATGTAGGAAGAAAAATGGAGAATAGTTCAGACAGCTCAAAATACCCACTTAGAGAAAAGGAAAAGGAGTTTACTCTGAAGTCCTAGAAAGATTTCCAGGCAGCATTGGGCATCCAGTTGTTAAAAAGCATGAATTACAGTGGTAGGGTTCTGAGATTTTTTAAGGCAACTCTTAAAATCCTTTATTATCCCAGGAAAACTCAATAGATGAAATGAAATTGTTTCATGCAGATTTTATTTAATGAACATGTATTTTCATAATTAAAACATCAGTAATTTTGAATAAATAAAAGTAACCACAGTATTACTCCTGCATATGTACAAGAAAATATCATTGTGAATGAGCAACACCAGAAAACTAAACCATAATCTCCTGTATGGAATGAGAGTAAAATTCTGGAAGAAGAGGTAGCCAAGAACACTCACATGGATCAGGGTAGACCGCATTCGCATATCATATTGTATCTCATGCCCTTTGATTGAACCTATTTACTTGGTAAGTGAATCATTGTTCAGAGTCACTAACAGATTGACCTGGAACTGAATTTCATTGATAACGTAATGAAAGGTAAGCCTATGCTGTACAAAGTACTGGAAGCTAAATCCATGCTCACAGGGGAGGCCACCCAGTGAACTCAGAGGGCTGCCCTCTCAAGTTGTCTCTTCTGCTTCTTTTTGGCATATATTGAGAAAGTTTCTATCTTGTGACTTGGCTGTAAAAAGCAGGCAAGTTTGTAGCAGCATATGAAATTCCTTTTCTAAATGTGTTCTAAGACATTTCCCTGGTAACCATGCCAGATTTCCACTCAGCTCTCTCCTCCTTTCATGATAAATAACTAATTTCTTAGCGGTACTATGCCTTTACGTTGCTTTACCACTGCAGGTTGCCGATGGACCTGTAACTTACTTCCTGAACATTATAAAAGGACAGCTGACCAGATTCCTTTTGAAAAAAAAAGTCACAAAAAAAGAACAAGACGTGAAACTGTATATACAGCATAATTACAAGTCAGATTCTGAATAAGTGATTATATATAGAAAACAAAAAGAACATCAAAATGTTAACTGTAATTGTCTCCCAATGGTGAAAATTCCAATTATTTTCTTCCTTTTTGGTATTTTTTTTTGTTTCATGCAGATTTTATTTAATAAGCATGTATTTTCATAATTAAAAATTAGTAATTTTGAATAAATAAAAGTAACCACAGTATTATGCCTGCATATGCACAAGAAAATGTCATTGTGCTGCATTTAAGTAGCACAGGAAAATCATAGAAATTGGTCTGTTTCATGGCCACAGAGATGGGAACCATAAAGACTGGAGATTCCAAAAGAGAGAAGAAACAAGAAGGAGACCAAGGGTAGAAAAACTACCTATTGGGTGCTACGTTCACTACTTAGGCAACATGATCATTAGAAGCCCAAACCACAGCATCATGCAATATACCTCTGGTACAAACCTGCACATCTATTCCCCTGAATCTAAAATTGAAAAAAAAAAAAAATAGTCTGCTTTTCCTCATTAACCTTCAACACAGAAGAATGATGTTCTCTTTTTATTTTTATGAATACATAATAGCTGTACATATTTATGGGGTATAAAAGGTGAAGTATATTTAAATTTCTTCCTAGAGAGTAATTTACCATCTTGCTAAATATAGAGTGGGTAATTCTTAGTGGAATCAGTAAATTCTAGGATTCTTACAAAAATAGCCTGTCATTAAACTCTATTGTGTTAGCAGAAACTTCAGCTTTTCAGAATAAAAGTTAGAAATAAAAGAGTCTGACATTAACCTATCTATTCCAGGGTATAAGATATTAGCAGCTAATTTTTTTTATTAAAAGCAATACTCAAAAAAGAGATGTATTTAAGCATTTCTGATTTATATTTTCATTATTTTCTCCGTTTTTAG
Seq C2 exon
GTAGTATATGATGAAGTCACAGAGCTCCAAGGACATGTCTTAATGCTTATTGTGAAGAGTAAAACTGTATTTGTGGGAGCAATTAACATCCGACTCTGTAGTGTCCCACTCGATAAAGAAAAATGGTATCCATTAGGAAACAGTATAATTTGACCATTGCTATGAACATATGCATTATTCATTAACTACTTGTATTTTTTTCACTTCTGGGCCTCTGAATCACATAAGTAAGGCATCTTTGTTGTCAAAGACAGCACAGGGTATTAAGGACACAGAAAAAAAATCAGAATTAGTCTTTTGTGTTGTTTATTTTCTACCTGTGCTTTCATTGTTTTTTCATAATCTTTTCTCCTTCAGTGGAGTACTGATTGCATGAAATTTGATGTGTAAAATAATAAAAGACCTTTATTAAATCATTTTAATATATTTTAAATTAAACATAGGTTTACATTTGTTTTAATTGTGTGCCTACAGTTAAAAGCAGTATTTTTAATGTATTTTATAAGAAAGACAATCAAATAAACCTCATCAATTAATTCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-PIK3C2G:NM_004570:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(50.0=100)
A:
NA
C2:
PF0016825=C2=PD(34.1=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)