HsaINT0131463 @ hg19

Intron Retention

Gene

ENSG00000138738 | PRDM5

Description

PR domain containing 5 [Source:HGNC Symbol;Acc:9349]

Coordinates

chr4:121737987-121739682:-

Coord C1 exon

chr4:121739508-121739682

Coord A exon

chr4:121738080-121739507

Coord C2 exon

chr4:121737987-121738079

Length

1428 bp

Sequences

Splice sites

5' ss Seq

ACAGTGCGT

5' ss Score

5.66

3' ss Seq

TTTTTCCTATTTCCCTTTAGTGT

3' ss Score

10.89

Exon sequences

Seq C1 exon

ATCGCCTTGGCTGTAAAGAGGACTATGCTTGTCCTCAATGTGAATCGAGTTTTACCAGTGAGGATATTCTTGCTGAGCATCTCCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATTTAAGTGCAAGAACTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA

Seq A exon

GTGCGTATATTAAAGAAATATCTTTAAAATTATAAGCTAACACAGTTTATTCCATTCAGCTTAACTCATAGTTTTTAACCTGTGTGTGTGTGTGTGCACGCGCGCACGCGCATGTTTTGTGTGTGAATGAGAGATTAAGCATTTTACATTGGTATTGTCATTAACTCATCTTTTCTTAGTATAGTATGTTGATTATTAAAATATTCAAATTATGGATTTTAACACATAAACACTGTTTATGGTAATTAGTTTTTGTCCATTTATTAATTTGCCATTATGTATCAAGCTTACTGGTTTAATCTGAAATTCAGATATGCCTACTTTAGTTACTCCTTTGAGGTAACAGACTTTTAGTTGTCTACGTTTTATATTCCTTCTGGAATCTGTTTAAAAAAAAGTTTAAGAAATGGGGAGTTCAAAGTATAAAGAATTCCTGGACATTTTGGGAAGCACTGTTTATTTGAGAGCAACTTTGGAGGAATAATTTAAAGATGCATAGGTCCCAGTTATAACAATATGATTAATTAGATGATCCCACACATAGCTCTGTACCCTTTTTTATTTTAACAATTTATATTAACAACATAAAATTATCTTTATTTAAATATTTTACAGGATCAGAAATTGTTAAAAGTGAGAAAGTAGGTATATGCATTTGTAAAGTTTTATTTTTTTACTCATTAAAGTTTGTAATTTTAATCAGATAATTGAATTTAAGTAATTTAAAAGCATATTTACATATTGGATGCAACTGTAGACTCTCATTGTGTTGAAGCCAATTACTTCCAATATGAAAGTAATGTAAATTGTCCCATCTCATCAACATATCTCTTCTCTTATGTGCTCCCATCCTGCCATTTACTTTCTTTCTCCAACCTTAGCTTCTCATTTTAACAGAATGTTACCTTACTTATGAGCAAGAAATCTTTAACATAGGCTTTAATGTTACATTTTTACATTTTTGTGTTTCATTGAACTAAAATTCTGAAATATGCTACATTTCATACTAAGACTGTATGAATATTATTATATGCATCAACTTTTGCTTATAAAAATTGAGATGAAAATTGTGCTTAAAACTTAATAAATGTTCAGAATATCAAAACTTTTATAATAGCAGGATACTACATATTTAGAAATTCTATTGTACTTCCTTAAAAAACAAGCAAGGACTATATGCTTTTAAATAAATAGATGTTAAGTTGCATTCTGGTTAGCTTTTATTGCATTTAGTATTATATATTTATACAAAAGACACTGCTGAGCAAGAGCTTATAGTTAAGGTACTGCTAAAAATTTAAAAAGGCAAAAGACAATGAAAAAAGGGATCACGAACATGACTTTATTCAGAGTTAGTGTAGTTTCATTTTTGTCTTAGAGTTCCAGTTTTTGTTTTCTTTTCTTTCTCTTTTTCCTATTTCCCTTTAG

Seq C2 exon

TGTTCTTCAGTGCACAGCGAAAAGCAGTCTAAAGGAGTCTTCGCGAAGTTTTCAGTGCTCTGTTTGCAATTCTTCCTTCAGTTCAGCATCGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000138738-PRDM5:NM_018699:5

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.073 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF100834=DUF2321=FE(69.9=100),PF138941=zf-C2H2_4=WD(100=40.7),PF047079=PRELI=PU(54.7=88.1),PF0396611=Trm112p=WD(100=81.4),PF0009621=zf-C2H2=PU(78.3=30.5)

A:

NA

C2:

PF100834=DUF2321=PD(27.7=71.9),PF047079=PRELI=FE(32.6=100),PF0009621=zf-C2H2=PD(17.4=12.5),PF128742=zf-met=PU(66.7=43.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000264808