HsaEX0049960 @ hg19

Exon Skipping

Gene

ENSG00000138738 | PRDM5

Description

PR domain containing 5 [Source:HGNC Symbol;Acc:9349]

Coordinates

chr4:121737608-121739682:-

Coord C1 exon

chr4:121739508-121739682

Coord A exon

chr4:121737987-121738079

Coord C2 exon

chr4:121737608-121737729

Length

93 bp

Sequences

Splice sites

3' ss Seq

TTTTTCCTATTTCCCTTTAGTGT

3' ss Score

10.89

5' ss Seq

GAGGTTTTG

5' ss Score

-0.23

Exon sequences

Seq C1 exon

ATCGCCTTGGCTGTAAAGAGGACTATGCTTGTCCTCAATGTGAATCGAGTTTTACCAGTGAGGATATTCTTGCTGAGCATCTCCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATTTAAGTGCAAGAACTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA

Seq A exon

TGTTCTTCAGTGCACAGCGAAAAGCAGTCTAAAGGAGTCTTCGCGAAGTTTTCAGTGCTCTGTTTGCAATTCTTCCTTCAGTTCAGCATCGAG

Seq C2 exon

TTTTGAGCAGCACCAGGAGACTTGCCGGGGGGATGCCAGGTTTGTGTGCAAGGCTGACAGCTGTGGAAAGAGGCTGAAGAGCAAGGATGCCCTGAAAAGACACCAGGAAAATGTCCACACTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000138738_MULTIEX2-6/9=5-7

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.073 A=0.000 C2=0.119

Domain overlap (PFAM):

C1:

PF100834=DUF2321=FE(69.9=100),PF138941=zf-C2H2_4=WD(100=40.7),PF047079=PRELI=PU(54.7=88.1),PF0396611=Trm112p=WD(100=81.4),PF0009621=zf-C2H2=PU(78.3=30.5)

A:

PF100834=DUF2321=PD(27.7=71.9),PF047079=PRELI=FE(32.6=100),PF0009621=zf-C2H2=PD(17.4=12.5),PF128742=zf-met=PU(66.7=43.8)

C2:

PF047079=PRELI=PD(11.6=26.8),PF128742=zf-met=PD(28.6=14.6),PF0009621=zf-C2H2=WD(100=63.4)

Main Inclusion Isoform:

ENSP00000264808