GgaEX6035037 @ galGal3
Exon Skipping
Gene
ENSGALG00000011963 | PRDM5
Description
NA
Coordinates
chr4:55802191-55804012:+
Coord C1 exon
chr4:55802191-55802365
Coord A exon
chr4:55803537-55803629
Coord C2 exon
chr4:55803891-55804012
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTTTTATTTAGTGT
3' ss Score
9.14
5' ss Seq
GAGGTTTTG
5' ss Score
-0.23
Exon sequences
Seq C1 exon
ATCCCCTCACTTGTAAAGAGGACCATGCATGCCCAAACTGTGAGTCCAGTTTTGCAAGCCAGGAGATTCTAGCTGAACATCTTCAGACATTGCACCAAAAACCCAGTGAGGAAAAAGAATTCAAGTGCCGAAACTGTGGAAAGAAATTCCCTGTTAAACAAGCTCTACAAAGACA
Seq A exon
TGTACTTCAGTGCACAGAGAATATCAACCCAGGAGACTCTTCAAGAAGTTTTCAGTGTTCTGTTTGCAATACTTCCTTCAGCTCAGAATCGAG
Seq C2 exon
TTATGAACAGCACAAGGAGGCATGCAGAGGGGATGCCAGATTCATATGCAAGGCAGATAGCTGCGGGAAGAGGTTCAAGAGTAAGGATGCCCTGAAAAAACATAAGGAAAATGTTCATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011963-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0396611=Trm112p=PD(70.7=89.8),PF0009621=zf-C2H2=PU(78.3=30.5)
A:
PF0009621=zf-C2H2=PD(17.4=12.5),PF128742=zf-met=PU(66.7=43.8)
C2:
PF128742=zf-met=PD(28.6=14.3),PF0009621=zf-C2H2=WD(100=61.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATGCCCAAACTGTGAGT
R:
CATGCCTCCTTGTGCTGTTCA
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]