DreEX0058025 @ danRer10
Exon Skipping
Gene
ENSDARG00000006288 | prdm5
Description
PR domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040708-1]
Coordinates
chr23:2010912-2011753:-
Coord C1 exon
chr23:2011576-2011753
Coord A exon
chr23:2011145-2011240
Coord C2 exon
chr23:2010912-2011033
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGTCT
3' ss Score
7.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGCTGATGATCAAAAAGGAGGATTACCCATGTCTGCTGTGCGAGAGCAGCTTCCCCAGTGAAGACGTGCTAGCAGAGCATCTCCAGAGCCTCCACAACAGAGGAAGTGCTGAAGACAAAGAGTTTAAGTGTCGATCCTGCGGAAAAGAGTTTCCCGTCAGACAAGCCCTGCAGCGCCA
Seq A exon
TCTCCTTCACTGTACAGAGAGCTCTTCTTCATCAGGAGACCCTTCTAAAGCTTATCAGTGTGTCCTGTGTCACGGCTCCTTCAGCTCACAGTCCAG
Seq C2 exon
TTTCCTGCAGCATAAAGAGGCGTGTAAAGGAGACGAACGCTTCATCTGTAAGGCGGAGAGCTGTGGGAAGAGATTCAAGAGTAAAGACGCACTCAAGAAACACAAAGGCAACATCCATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006288-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0389611=TRAP_alpha=FE(42.4=100),PF138941=zf-C2H2_4=WD(100=40.0),PF097235=Zn-ribbon_8=PU(59.4=31.7),PF0009621=zf-C2H2=PU(78.3=30.0)
A:
PF0389611=TRAP_alpha=PD(10.1=42.4),PF097235=Zn-ribbon_8=PD(37.5=36.4),PF0009621=zf-C2H2=PD(17.4=12.1)
C2:
PF0009621=zf-C2H2=WD(100=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGAAGACGTGCTAGCAG
R:
CCGCCTTACAGATGAAGCGTT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]