BtaEX0028366 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012111 | PRDM5
Description
PR domain containing 5 [Source:HGNC Symbol;Acc:HGNC:9349]
Coordinates
chr6:4606323-4608086:+
Coord C1 exon
chr6:4606323-4606497
Coord A exon
chr6:4607612-4607704
Coord C2 exon
chr6:4607965-4608086
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTATTTCCCCTCAGTGT
3' ss Score
10.91
5' ss Seq
GAGGTTTTG
5' ss Score
-0.23
Exon sequences
Seq C1 exon
ATCGCTTTGGCTGTAAAGAGGACTATGCCTGTCCCTACTGTGAATCGAGTTTTACCAGTGAGGAAATTCTTGCCGAGCATCTTCAGACATTGCACCAGAAACCCACAGAGGAGAAAGAATATAAGTGCAAGAGCTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACA
Seq A exon
TGTTCTTCAGTGCTCAGCGAAAAGCAGTCTGAAGGATTCTTCACGAAGTTTTCAGTGCTCTGTTTGCAATACTTCCTTCAGTTCAGCATCGAG
Seq C2 exon
TTTTGAACAGCACCAGGAGACGTGCCAGGGAGATGCCAGGTTTGTGTGTAAGGCAGACAGCTGTGGGAAGAGGCTGAAGAGCAAGGAAGCCCTGAGGAGACACCAGGAGAACGTCCACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012111_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(88.1=88.1)
A:
PF056057=zf-Di19=PD(10.2=18.8),PF128742=zf-met=PU(66.7=43.8)
C2:
PF128742=zf-met=PD(28.6=14.3),PF138941=zf-C2H2_4=WD(100=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACCAGAAACCCACAGAG
R:
CAGGGCTTCCTTGCTCTTCAG
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development