HsaINT0132634 @ hg38
Intron Retention
Gene
ENSG00000196504 | PRPF40A
Description
pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr2:152658948-152659189:-
Coord C1 exon
chr2:152659093-152659189
Coord A exon
chr2:152659010-152659092
Coord C2 exon
chr2:152658948-152659009
Length
83 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TATCCTTTTGTGCTACTCAGAGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GGGTCAGATTCAGATGATGATGATAGCCATTCAAAGAAAAAAAGACAGCGATCAGAGTCTCGTTCTGCTTCAGAACATTCTTCTAGTGCAGAGTCTG
Seq A exon
GTGAGCATTTCTATTTATTTGATTAAATCATTGACACTGATATACTCAAAGTCTGACACTTTTTATCCTTTTGTGCTACTCAG
Seq C2 exon
AGAGAAGTTATAAAAAGTCAAAAAAGCATAAGAAGAAAAGTAAGAAGAGGAGACATAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196504:ENST00000410080:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGATTCAGATGATGATGA
R:
TGTCTCCTCTTCTTACTTTTCTTCT
Band lengths:
152-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development