HsaINT0146715 @ hg19
Intron Retention
Gene
ENSG00000120341 | SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177916960-177921130:-
Coord C1 exon
chr1:177921049-177921130
Coord A exon
chr1:177917078-177921048
Coord C2 exon
chr1:177916960-177917077
Length
3971 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCC
5' ss Score
6.32
3' ss Seq
TTTTTTCTGGTGCTTTTCAGTGT
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTTCACCAGCACGCTGGCGCTCAATGACCCACTGCAGACCCTCTTCCAGCTCATGTCGGGGAGGATTCCACAGGCAGCCACG
Seq A exon
GTACCCCTATGACAGGATTCCTTTATCACCCAGGCATCCCAAGGGCTTGAGGGGGCGGGGACTGCTCAGGAGTGCACTGATGGCTTTCAGGAGCAAAAGTGATGATAATATTAATGGTTTGTTAATCACCATGTGCCAGGCCCTGTGCTAAGTGCTTTGATGCATATTATTTGGTTTAATGCATAGAGGTAGGAAACATTCTTTCTGCTTTGCAGATGTGGAAACTGAGCTCCAAAGGTGTAAGATGACCCAAGATCAGAGATAGTGAGTAGTGGGGTCAGGATCTGTCCAGGTCTGTCTGACTCTGAAGACCTTGGCCTTCCCAAAATGTCAAAGCTGCCTGCTCTGCTGTGAATGGCAAGAGGACCTGTGCCTGTTCTGCAGGCTTCCCCTGGCAGGGCTGCCCTTCTTTTCTCTGGAGGAATGTTTCCCACCACTGCACACTGGCACTTCAAAGCTGGACATACTCGATTTCAATCTTCTAGAGTTGATGTGGCTGAGAGTCTGAGGCTAGCTTGATAGTTTTCCCATTATAGGAGACTTGATCTTTTGGCCCCAAAGTATTCCTTCCTTACCTTTGACGTCCAGTCACTTTACTAGATTATGCTCTGGTGTTGACTGTCTGGATCGATTTTTTTCCTTGGGGTATATATAGCATGCCCTTTTAATATGTACATTCATATGTTAGAGTTCAGGGATATTTTCTTGGATTATATCCTTCAATATTTGTTTTGTTCCCATTATTTTGGTTTCCTTTTCAGGAATTCCATGTACACATATTTCATATATATACACGTATGAATTATATCTATAATTTTCTCTTTAATAATTTTTTATTCTCTTTTTTCCTCTCTTGCCCTCCTTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCTTTACATCCTCCCTCCCTGTCCTCCCTCCCCTCCCCTCCCTCCCTCCCTTCCTTCCTTCTTTCCTTCCCTCCTTCCCTCCCTCCCTCCTTTACATCCTCCTTTTCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTCCTTCCTTCCTTCCCTCCTTTCTTTTTTCCTTCCTCTGTCCTTTACTGTGTTTTCACTGGTGTCTCTTACTTTTGTGCTCTTTTGTTTCTGTCTTTATTTCTTCAATTTCCCCCTACTTTTTTCCTGAGCTCTGAACATTACATTCATTTCCTGTTATCTACCATCTATTTCCTGAGCTCTAGTAACTCAGATTATGCTCTTGCTTCATAGATGCAATTGCTTCATTATTTTACTTAAATTCATGACAAAATGTTTGGTGATAATTTTTCATTTGTTTTGTGGTAACATTTTTGTAGTGAATGTTCTCTCTCCTCTCTATTTTTCATGTTACCTTCCTCTTTCTGTCTTAGGGTGTATTTGTATACATTCTGTGCTTGTTTTCTCATATTACATAACTTTAAAGGAGTTGACTCTTCCCTGGATTTTTATTTCCAGTTATTTATATTAGGTTTGTGCAGAGGATGGGCCAGGCCATATTCCAGGCCATCCGACATTTTCTGCAGGACCCAGTTTTCCATGTGAGCCTGAGTTGCCTTTGCTGCTCTCCAGCCAGTGGGGAGAGCTGTGGGGTCCTCTCCCTCGTGTCCTCTTGGCTTCCCGGGACATGGAGGCACGTCTGTCCAATCTCCATTACTTTTGGTAATGGAGCCTTTTCTCGTATCTTGAGGCTTGGGTTTTTGGTGAACACTAGTTTAAATAAAAATCGACCTCACACTTTTCATTTTTTTTTTTTATCCTTCTTATGGCTTGTGGCTAATTCCAAGAAAAGAGAAATGATTTTCATGCCCCATCATCAAATCAACCGGCTATTTTGTAGCACAGAGTGTGCCTCACAATTCAGTGGAATGGCCTGTGCTCCAGAATGGAATTGCATTATGTCACAAAGTACTAAATGCAGGAAATGATACAATTAGCTATGGTTCATTTTTTTTTTTTGTAATAGTAGAGTTAGCTTAATTTCCCCTATTTTTAGATGAGAAAACGGAGGAGCCAGAGGTGATGTGCCAATGCAGTATTTGATCTTAGGGAGTTTCCCAGCACTTTAGCATCTACTAAAAGGCTGGACTTCAGTTCCATGTGATGAATGGGGTGGTGGAAAAGCATGGCAACAGGACAACACAGACGTGGGTTTCACACAAGTTTAACCTGGACTCTATGTACATCTTTCTGCCAGGGGAACTTGGCTTTGTGTCTTAATTTCACAGAGCCTCAGTTTTTAATCTTTATGGGGATTTTGGTGCCCAGTAGAGTTATTGTGAAAATTAAGGGAGAGAGAACATCTGAACATATCAACCATCATGCTTGGCCCATTTTCGTTAATTAATAAATGTTGGTGCTTTCTCTCTCTCTCTCTCTCTCTACTGTGTCCCCTCCGCCTCTCCATTGATCTGATTTATAGTGATCTTTTCAAATCACCAGCGAGGAGACAGAATAATGACCTCTAAGTTTTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGCAAGGGATTTCCTTCCCTTTTGCTGGTTTCTGTAGATCCAGCAAGAAGCAGTTTGGCTTACATGTTAAAATGCAGGTCATAATAGGACTTAGCACATGTGATTATTGGTAGGAGAAATGCTTAGCACAGGATATAGTTCATGGTTCGATGTGACACATGAGAACTGCTATTATTATGATTTATCATCACCATTATTGTTATCATCCTCTTCTCACTGCATTGACCAGATCAACAAGGACTGGGTATAAAATGGAGTTGAATAAAGCATCTTTTATTCCCTGGGATAATTACAAAGACCAAGTAATTATGAATGGTTTTAACTCCAAATCTTAGTTATTATTGGCAATCTTCTGCCCTACCTATCTATATAACAAATTGGAAGGTAGGCGGCTATGCAAATCACCTCTTTCCTCTGCTGAGCTTCCAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATACCTACATGTAATTGATTAAGTGCAAACCAAATGTGAAGCACCATGCGATGTGCTTTACACAACTATCTTATTTTATTATCAACAATAACCTGTTAGGTAGAAATTACGATCTCCATTTTAGGGATGAGAAAACAAAGGTTCAGAGACATTAAGAAACTTGCTCAAGGTAGGTAAGCTAGTAAGATGCAGGACTCGAGTTGGGGCCTGTGTTGTTTCCATGACATTATATTGTTTCTTTATTGATATTTTCTGCCTTGAAATTCTCCTTTATTTAGTAGGACAGCCTTAGGGAGAGATTGTGGGGAAAACACCATTGATGCGGGGCTTTGTACATTTCCACCACGCTGCTTACTCTTTTTTGCCCCCTGGTGGAATTCTGCTGCCTCTGCATCGTCCTAGCTGGGCCACTTGGCTTGATTTTCTTATTCTTAAAGTGGCAGTAGGAACTAGACTTCATAGGGTTCCTGTGAAGATTAAGAGGATGTGTGTGAATGGGCTTTGTAGAGCCAGAAAACATAGGCATTTGGTAAGACATTAAGCAGGCCCGTGTTCCCCCGACTTCTGTGACAGGCTGTGGCCTCTTCTACTCATAAGCCAAGGATGTTTGATCTTCCTTCTCCCACTGAAGCCTCAGGGTTTTTCTGAGTTTTGTCTCTAGCTATCTGGGGGTCAGGCACTGGGGAGAAATGTGAAAAATAGTAAGTGAGCAATGTCATTTTATTTATCCATTTTCCAATATCCCTGTGAATGTATGTATGTATGTATGCATGTACACGTATCTGTCTATCTGTGTCCTTCTGACAGTTTTACTTTTTTAAAGATGAGAGCTCTAAATCAATGAATGGCAGCATTGCAGGTGGTAGAGTGGGCATTCTCTGACCACTTCTGAACCAGGAAATAGACAACAGCCTTCTTTATGTACATCTGGCCATTCTTAAATGATTGTACATTTATTTTTTCTGGTGCTTTTCAG
Seq C2 exon
TGTTGTGGAGAAAAGCAGTGGGGAGACTGGAGGCCTCACTTGGCTGTGATTCTGTCGAATCAGGCTGGGGACCCAGAGCTGTATCAGCGTGCGATTGTTGCCATTGGGGACACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-SEC16B:NM_033127:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(16.9=100)
A:
NA
C2:
PF129312=Sec16_C=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)