BtaINT0130211 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60766747-60771839:-
Coord C1 exon
chr16:60771758-60771839
Coord A exon
chr16:60766865-60771757
Coord C2 exon
chr16:60766747-60766864
Length
4893 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCC
5' ss Score
6.32
3' ss Seq
ATTTTTCTGCTGCTTTTCAGTGT
3' ss Score
9.11
Exon sequences
Seq C1 exon
CTTCACCAGCACACTGGCGCTCAACGATCCACTGCAGACTCTCTTCCAGCTCATGTCGGGAAGGATCCCACAGGCAGCCACG
Seq A exon
GTACCCTTCATAACAGGAGCCCAGCATCCAAAGGGTTTAGTGTGTGGGGACTGCTCAGCGACGAAGTGATGGCTTTAGAGATGACAAATAAAATAACTGTCCCTTAATCCCCTCCCATGTGCCTGGCCTTGTGCTAAGTCCTGTGATGGATATTATTTCATTTAATGTGTGGAGGTAGGAATTATTATCCCTGTTTTGCAGTCATGAAAACTGAGATGCAAAAGTGTAAAATGACCCAAGATCACAGAGCTAGGGGCAGAGGAGTCAAGATCGGTACAGGTCTGTCTGATTCCGAAGATCTTGCTCTTTCCACAAATCCACAGCTACCTGCTGAGTGGAGAATAGTGAGTGAAGCTGAGGCTGCTCTCCCCGCTTACCACAACCAGGCTTCCTTTCTTCCCCACCACTGCACGAGACCCTTCAAACAGGGACACTCTAGATTCTACAGGTCATCAGCGTGAGATGTGGTTCAAGAGAACCCTGAGGCCACCTTGATAGTTTTCCCATTATAAGAGACTTGATCTTTTTGTCCTAAGGCATTCCTTCCTTATCCTCGAAGTCCAATAATTTTAGTAAGATATATCTTATTGACCATCTGTGTCGATTTTTGGGGGAATAGAGCACGCTTCTTTTAATATGTGCATCCATCTCTTACAGTTCAGGAAAAATTTCTTGAATTATATCCTTCAGTATTTGTTTTGTTCTCTTATATTGGTTTTCTTTTCAGGAACTCCCTCTATATATAAAATATAATAATAATATATATATATATATATATATATGATTCTTTCTTTTCTTCTTTTTTGCTGTGTCCCTCCTGTGTGTCTCTTACTATGTTTTCATCAGTGACTCTTGCTTGCTATGCTCTTTGAAATTTTGTCATTAAAAAAATATATATGTATTTATTTATTTGATTTTTTTTGGTCTTAGTTGTGGTGCTTGGGTTCTTTGTTGTGGGAATGGGGGCTTCTCTCTGGTTATGGTGTGTGGGCTCCAGAGCACGTAGGCTCAGCAACTGTGGTGTCTAGGCTTATTTGCCCCATGGCATGTGGGATCTTGGTTCCCTGACCAGGTATAGAACCCACATTCCCTGCATTGGAAGGCAGATTCTTAACCACTGAACCACCAGGGAAGTCCCCTCCATTTTTGTCTTTATTTCTTTGATTTTCCTGCCCCTTCTCTCCTGAGCTTTGCAGGTTACATTTGCCTCCTCCTGTTCTCCACCATCTCTTTCCTCTGCTCCTATAACTTAGCTTTAGGCCTTTGCTTCATAAAATAAATTGTTTCATTATTTTACTTACATTCATGATGAAATATTTGGTGACCATTCTTTGTTTTGTGGTATCATTTTTTTTTTGGTGAATGTTCTCTCTACCGTCTTCCTTCCTTTTATCTTGATGGTATATTTGTACAAATTCTGTATTTGTTCCTTCACAGGCTTCAAGCCTTCCTTGGGCCAGTTATTTACAGGAGGTTTGAGCTGGGGAGATGCCAGGGCCATCTTCCAGGCCAGCTGGCATTTCCACACAACCTAGTATTTTCTGTGAGCATCTTTGCTTCTCCCCAGCCAGTGGAAGACCTGTGGGATCCCCTGTCTCTGGTGTTCTCTCTCTCTGCCTCCCGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCTTTTCTTCTTTTTTGCTGTGTCCCTCCTGTGTGTCTCTTACTATGCTTTTCATCAGTGACTCTTGCTTGCTATGCTCTTTGAAATTTTGTCATTAAAAAAATATATATGTATTTATTTATTTGATTTTTTTTGGTCTTAGTTGTGGTGCTTGGGTTCTTTGTTGTGGGAATGGGGGCTTCTCTCTGGTTATGGTGTGTGGGCTCCAGAGCACGTAGGCTCAGCAACTGTGGTGTCTAGGCTTATTTGCCCCATGGCATGTGGGATCTTGGTTCCCTGACCAGGTATAGAACCCACATTCCCTGCATTGGAAGGCAGATTCTTAACCACTGAACCACCAGGGAAGTCCCCTCCATTTTTGTCTTTATTTCTTTGATTTTCCTGCCCCTTCTCTCCTGAGCTTTGCAGGTTACATTTGCCTCCTCCTGTTCTCCACCATCTCTTTCCTCTGCTCCTATAACTTAGCTTTAGGCCTTTGCTTCATAAAATAAATTGTTTCATTATTTTACTTACATTCATGATGAAATATTTGGTGACCATTCTTTGTTTTGTGGTATCATTTTTTTTTTGGTGAATGTTCTCTCTACCGTCTTCCTTCCTTTTATCTTGATGGTATATTTGTACAAATTCTGTATTTGTTCCTTCACAGGCTTCAAGCCTTCCTTGGGCCAGTTATTTACAGGAGGTTTGAGCTGGGGAGATGCCAGGGCCATCTTCCAGGCCAGCTGGCATTTCCACACAACCTAGTATTTTCTGTGAGCATCTTTGCTTCTCCCCAGCCAGTGGAGATGGCTGTGGGATCCCCTGTCTCTGGTGTTCTCTCTCTCTGCCTCCCGAACCCACCTCTGCTCAATCTCTTTTGGAAGCCTTTTCTTGTATTTAGAGGCTTGGGTTTTTGCTGACATTAAGTTTTAATGAAAACACACTCACACTTTTGCTTTTTTGTCCTTCTTATTGCTTGTGGACAATTTCAAGAAAAGAAAAGAGAAATACTGACTTTCATGCCCCTTTGTCAAACGAACTGGCTATATTAGAACATGGGATGTACCTCACAGTTCTGCCGAATGCCTGTGCTCTGCAGTGAAATCCTACCATGTCACAAAACGCTAAATGCAGGGAGTGATGTAATCAGCATATGGTCCATTGGGTCTCAGTGTACTGGTAGAGTTTGCTAAATGATCCCTGCTTTGGGGTGAGAAAACCAAGGAGCCAGAAGTGATATGACAGTGTGGTATTTGACCCCGTGTTGGAGAGTTCCCTAGCATCACAGCAGCCAGTAGAAGGCCAGACTTTGGTCCTTAGAATAACAGGTGTAGTGGACGAAGCATGGAGACTGGAAAGCAGAGATGTGGGCTTCTGTCACAGGCTTAACCTAGGCTCTGCTCCTCAGAGTCTAGCTGTGTGAACTGGGTCTTGTTACTTAGTCTCAGAGTCTCAGCTTTTCATCCTTTTGGGCATTTTGATGCCTAACAGAGCTATTGTAAAAATCTTAAAAAGAGAATATCTGAATGTATTAATGACCATACTTGGCCCATTGAAGTTAGTTAATAAGTGTTCTTTCTCTCTCACCACCTCCATAGACCTGCTTTACAGTGATTTCTGCTCCCCCGCCCCACCCCCCAAATCACCTGGGGAGAAGACAGAAGAATTGCTTCTAAGTTTTTGTTCTTTTAGCAAGAGCTTTTCTGTTGCTGGTTCCCTTAGTTCCAGCCAGAAAGAGCCTGGCTCACACGTTAAAATGGGGATAATAATAGTACTTAATGCATGTGATTGTTCATAGGAGAAATGCTTAGCACAGGCTGCGGCCCAGGGTCAGAGTGCAATAAGTGAGAACTGCTATTATTTTTGTGATTTATTATCATCATTCCTCTCATTCACACTGCTTTGCCCAGATAAACAAAGAGTATCTATAAAATGGAGCTGGAGAAAGCATCTTTTGTTCTGTGGGATAATTACAAATACAATAGCAAATAATTGTGAATTGTTTTGACCTCAGATCTTAGCTATTACTGTCAATCTCCTGTTCTGTCCATTCTGTGTAACAAATTGGAGGACAGACTGGTCTGCAAATCACCTCCTTTCCTCTGCTGTGCTTCCGTGTGTGTGAGTATTTACACCTACATGTAATTTATAAAGTGCAAACCAAGTGCAATCTTATTTTATCGTCAACAGTAATCCCGTCAGGTAGACATTATGATCTCGATTTAAGAAATGAAGAAACAAAGCTTCAAAGGCATTAAGAAACTTGCTCCAGAGGCAGGGCCCCTGTTGAATCCAGAGCCTGTGACATTGTTTTGTTTATTGCTATTTCCTCTGCCCTGAAATTCCCCGTCATTCAGGAGAAGGACGGCCCATCCGTTCCCATGGGGCTTCCACCCGCGTCCACTTCTCTGACTACCCTCTACCGCCCCCTCGTGGAGCTCTGCTGCCCCTGCATCGTCACTAGCGACAGTGCTGGCTGGGCGCCTTGGCCTGTTTTCTCACTCCTCAAGAGGCGATAGGAATTAGATTTCAGAGTTGTGCGAAGATTAAAGAAGGTCATGTGTAGAAGAGGACTCGGTAAAAACAGAAGACATTAGCCATTTGGTAAAATATTAAGAGCCCAGTGTTCCCCTGTTTTCTTACAGGTTAATATGGAGTCCTCTCATGAACCAAGGGTTTGTGATCCTCCTTCTTCCATGGAAATATCAATATTTTTTAAAAAAAATTTTGTCCCCAGCTATTGAGATTAGGGGCATCAGGATGAAATTTGAAAATTAGTGACTAGTAGTGTGATTTTATTTTTATCTACCTCCCAATATTGGAGAAGGAAATCGTTGAAAAACACTCCAGTATTCTTGCCAGGAGAATCCCATGGACAGAGGAGCCTGGCAAGCTACAGTCCATGGGGTTGCAAGAATCAGACATGACTTAGCGACTAAACCACCAAGGACCACCTCCCAATATTCCTGTGTAGGTGTGTATGTAATGTGTCTGCCTACCCATCCTTCTAAGAATTTTGCTTTGTTAAAAAAAGAAAACTCAGAATCAATGAGTGGCTGCACTGCAGGCAGCCAAATAGGCATTCCTGGCAAATTAGAAAATAGACAACAGCCTTCCTTAATCTATGCTCTGGCCAGGCTGTATTACTCAGCCAATGTGCCATTTTTCTGCTGCTTTTCAG
Seq C2 exon
TGTTGTGGGGACAAGCAGTGGGGAGACTGGAGGCCACACTTGGCAGTGATTCTGTCGAATCAGGGTGGGGACCCGGAGCTGTACCAGCGCACGATTGTCGCCATGGGGGACACCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854:ENSBTAT00000001137:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(11.0=100)
A:
NA
C2:
PF129312=Sec16_C=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development