MmuINT0140507 @ mm10
Intron Retention
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157546199-157551124:+
Coord C1 exon
chr1:157546199-157546280
Coord A exon
chr1:157546281-157551006
Coord C2 exon
chr1:157551007-157551124
Length
4726 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTC
5' ss Score
4.58
3' ss Seq
AATTCGTTATTATTTTTCAGGTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
TTTCACCAGTACGCTGGCGCTCAATGACCCTCTGCAGACCCTCTTCCAGCTCATGTCAGGAAGGATTCCACAAGCAGCCACG
Seq A exon
GTACTCTCTGTCACAGGCTTCCTTCTATACCCCAGACTCCTAAGGGTTGGGAGTGGGGTGTTGGGGACTGCTTGGGAATGTAGTGATTTTTTTCTTTTTAAAGAGGAAGCATGAATACTAGTTTATTAATTATCTACAATGTGCTTGGCCCATATATTATTTGATACATAGTGTTTGATTTCATGAATGGAGATGGGAGTTATTATCCCTGCTTTGCAGACAAAGAAACAGAGCTGCCAAGGTGTAAAACGGCTCAGTCATGGAGGTAGTGTGGAGTAGAGTCATGACGGGTTCAGGTCTGTCTCACTCCAAAGACATTGCCTTTCACATAGAGCCTGATTTTACAAGAGCTGTTGTTCCTCAGACATCCTACAACTGGGCTGCCCTTCACTTCCCAAAGAAGGAACGTGTACCCATTCCATAAATCCTCCAGAGCTGGACACATTAGGCTTTGTGCTTTTGGAGTTGAATATGGCTGACAAGAAGGTGGAGACCAGCTGAAGAGCTTCTCTACTAGAGCAGACCTTATCTTTTTGCCCAAATGTATCCAATGGGGCATATACTTAAGAGCATATGCCCTTACTAGCATAGATCTTATTATGCATATATAGCATTTACTACCATATATCTTAGCATTGACTATCAGGGTTTGTTTTTGTTTGTTTGTTTTTCTGGGAGTACAGCATAGCCTGCCTTTTGAATGTCCACAATTCATATCTTAGAATTTAGAAACATTTTCTTGGATTATATTTTTCAGTATTTATTTTGGTTTAACTTCTAGGAGTTCCATGTATATGTATCTCATACATATAAACTATATGTAAACATGTGAATTATGGAAATATAGCTACCTCCTTTATGAGATCCATGCTGGTGTCAAACTCAGTATGTAGCTGAGGATCATCCTGAACTTCTGTCTTCCTGATGGCATCTCCCAACAGGTGTTAGGATTCCGAGCATGTGCCACCACACCCAGCTTTTACCTTTTTCTTAAATTAAAGACGTTCTTGTTCTTTTCTACCTCATTCTTCCCGTTGCCCACTCCTGTCTTTCCTTTTCTTGCCTCTGTCTCTGTCCTTTACGGTGTTTCCCCCAGGGTCTCTCGCTCTTGTGTTCTAACACTTTTGTCTTGGTTTCTTTAACGTTTGCCCCATTCCTTTCCTAAGCTCTGCGGGTCACATTTGTCTCTTCCTGTTCAGTGCCATCTCTTTCCTGAGCTCCTTTATGTCCAGTTTATGTTATTGCTTCATGGAAGTATTGCTTCTTTACCCTGTTCCTGCTCAATGCACGTCCCTTCAATCTCTGCTACTTTTGGCAGTTGTATCTTATATCTGAAGCTTGAGTTTTTTGCTAGCAACTGGTTTTAATGAAAAGGAATTTCTCGTCTTTTTTCCTTTTGACCCTCCTCTTATTGTAGATAATTCTAAGAAAAGCAAAGCAAAGAGAAATGATGTCTTCTGTCCCCCATCATTAAACCAATGGGCTATTTTGGAATACAGGGTATGCTTCACAAGTCAGTTGAACGGAAGCTTCAGTGCTGCAATAAAACTGCATCATGTCACGGAGCACCTAATGGAGGAAGTGATATAATCAGCCTGTGGTCCATTGGGCCTCCGTGATGAGGTGGAGTTAGCTAATCTCCCCTGCTCTTAGATGGGAGACTAAGGCTCTGCAGGCAACGCACCAGTTCAGTATTTGATCTTAGAGTGTGAGAACTTTCTGTCCTTTCACATTGAATACCAGGCCATCTTTCTTCTACATGGATAGTGTCATGGAAGAAACATGGCCACTGGATGCACAGATGTGGGCTTCATTCCACGTCTAAGTTTGACTTTGCTCATTACTGATAGGCAGACTTGGTTGCTACTTAATAACAGTTTTTCTCTTTGTGGTGATTTTGATGGCCAGCCAATAGAATTATGGGTGAGAATATCTGAACCCACCATGCTTGCATTCCCATCCCATCAAGAAAATTAGTCAATGAGTCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGCTGTTACTGTCTATTTGTCTTTCTGCCTCTCTATCTCTCTTCTTCTCCCTCTCCCCATCTCTCTTTCTCAATTGGCTTTATACTACCCGTGTCTTTCTCCAAACCAGGGAGGAAACAGGATGACTTCCAAGATTATTTCCTTTTTGTAAGAAAACTTCCCCTTCTGTTATATTCTTGAAGATCCAGCAAGAAATGGCCTGGCTTATATGTTTAAGCGAGGATAGCAGTGTCCTTGTGGTGTGTGATTGTTGGCAGGAGAAATGTTTAGCCAAGGGTGTGGCTCATGGTCTAAGCCACTGTCATTAAGTAAAACTATTACTCTGATGACTTCTTATGACCACCATTATGATATATACTGTTGAGATAGATAGGGAGCAAATATCACATGGAGTTGGATAAAGCATCCTTTATTCCTTGTGATGATTATAAACACTAAATAATTACAAATAGTTGGGAATTCTAAGTGTTAGCAATTACTGTCAATTTCACTCTCCCTCTGTGTAACAGGATTGATGTAGACTGTTTGCAAATTACCTTTCTTCTACTGAGGTTGTGTGTGTGTATATATAAATGTATACACACAAATGTGTGTTCATGCCTATTGTGAAATTTATAAGGTGCAAACCAAGTGTGAAGAACTGTGCTGTGTGCTTCATATAATTGTCTCATTTTATTGTCGCTGGGAATCTTCTCAGGTACAAATGATGATCTCTGTTCTAGAGACGAGGAAACAAAGGTTCAGTGCAATTAAAGACTTGCTCAAGTTCACACTACTAGCATGAGACAGGACTTGGGTGGAATAACTTAAAACACCCAAAGAAAGAGAAAGATATTAAAAATGGAAATATATTCCATGTCCAAGGATTAATAAAATTGATATCACAAAAATGACTAAGCTACCAAAAGCCGTTCACATTTTAATTCAATCCACGTAAAAATCTCCACCTCATTCTTTGCAAAAATAGAAGACACGATCCTAAAATTCATATGGAAACACAAAATACACCAGATAGGCAAAGCAACCTGAGCAAAAAGAACAATGTTGAAGGGCTCACCTTTCCAGATATTAAGGTATGTTACAGAGCCACAGTAGTACAAAGAATACGGTACTGGCACAAAAACAGACATCTAAGACAATGGACCAAGATCAAAGACCCAAACATGAGCACAGCTAACTACAGCCCTTCATATTTGACACAAATGCCAAAGACATAAGCTGGAGAAAAGGAAGCATCGTCAACAAGTGGCAGTGGGAAAACTGGATGCCCACATGCAGAAGAATGAGATTGGACCAGTGTCTATCTCCTTACACAAAAACTAACTCCAAATGGGTCAAAGGCATGTGAAATCTGAACCCAAGGCAAGCGCTGTGTGTGGGTCGCCTCAGTTATACAGGGCTGATGACTTTCTCCCGATGCATGGTGGAGTCCACGGCCACTGCACTGTCACCAGGCTGAGAGGGGAATTGAAAGTTGGCTTGATTTTCTCATTCCTTAAGTGGTAATAGGAAGCCATTTCACAGCAGCATCATGAAGGTTGCCATGTGTGGAAGGGCCTTATAAGACCAGGACACACTAGCCACTTGTAAGATACTGAGCAACCCGAATCCCTGACCTTTGTACAGGGTTAGCATGGGCAAGGGAGATCAATCTTTCACTTCCCTTTTCTCACTAAAACCTGAGTTGTTTTGCAGTGGGGACAGCAGGGTGTGGGGAGGACGTTGTCTCTAGATAATTGAAGTGAAGGCACAGAGAAGAAATTGGAAAATCAGTAAACTAATAATTCCACCTTATTTATCACTTTTATAACTAGTGTGTATCTGTGTGTGATATACATGTGTATGGGCTTGTATGTGTTTGTGAGCTTTTGTGTCTATGTTTCTGTATGTGTGGGTATGTGTTTGTATCTGTGTATGTGTATCTGTGTGTGTGTGTCCCTCTCTGTGTGTCTGTCTGTGTGTATGTATGTGTTTATGTGTGTAAGGGTATATGTGTGTATGTCTGTGTTTTTTTATATGTGTGTTTGTATGTCTGTATGTATGTTTTTGTGTCTCTGTGTGTATGTGTCTGTATGTATATATGCCTGTGTATCTGTTTCTATGTTTCTATGTGTGTCTGTGTGCGAGTGTATATATGTGTATGTATTTTTGTGTCTCTGTATGTGTGGGTGTGTGGGTGATTCTGTGTGTGTGTGCGTGTGTATGTATATATTATTTTCCCTCTCTTTATTATTTATTATTTTTTTATTTTTTGGCTTTTTCAAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGGGCTGGGATTAAAGGCGTGCGGTGCCACCAGCACCTGGCTCTTTTTATTTGTATTTTGAGACAGGGTCTCATTCTGGTCCAGACAGGCCTCAAACTCGTGATGCCCTCTTAGCCTCCCGAGTGCTAGGTTTACAGGTGTGGGCCGCCAACTTGTTCTGTGCCACACACCTGCTGCTTCAGGCAGATGGAACTCCGAATCAATGAGTATTAGCATCACACACACTGAATAATAGCATCAATAGCATAGCAGACATTCCTTGAACTCCATACCTACGAATAAACAGCAGCCTTCTTAACTACACCCTGGTTTGTGGTAAATGATTCTGTAATTCGTTATTATTTTTCAG
Seq C2 exon
GTTTGTGGAGACAAACAGTGGGGAGACTGGCGGCCCCACTTGGCTGTGATCCTGTCAAATCAGGCTGGAGATACAGAGTTGTACCAGCGAGCGATTGTCAGCATGGGGGATACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589:ENSMUST00000027881:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF129312=Sec16_C=FE(11.0=100)
A:
NA
C2:
PF129312=Sec16_C=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types