HsaINT0148379 @ hg38
Intron Retention
Gene
ENSG00000143379 | SETDB1
Description
SET domain bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr1:150942852-150943993:+
Coord C1 exon
chr1:150942852-150943053
Coord A exon
chr1:150943054-150943919
Coord C2 exon
chr1:150943920-150943993
Length
866 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTGTCACTCTTCTTTTATAGGTT
3' ss Score
12.08
Exon sequences
Seq C1 exon
GGCCAGGGAAGAAATACAAGGTGAAATTTGACAACAAAGGAAAGAGTCTACTGTCGGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAAGCTGTATGTGGGCAGTCGGGTGGTCGCCAAATACAAAGATGGGAATCAGGTCTGGCTCTATGCTGGCATTGTAGCTGAGACACCAAACGTCAAAAACAAGCTCAG
Seq A exon
GTACCTGGACAGAGGACTGTAAAGGGGTAGAGGCTGGGAGCACAGCACCTGCCCTGTTCGTGCCATAGACCAGATACCACAATTAGCTTTTGTCTTCTTAGTCCCCAGTGGACTGAAACCCTTACTCTTTCTTTACCACAGGAGTCATGTGGGTGATTCTTTCTTCCTCTTTCTCCTCCTGTTTTTTTTCCTTTTCTTTCCTCAAAGAGAAAACTAGGAAGAGAATAATGAGGATTGATTAATGGTCAGGGGAATACAATTCACACAGAAGAAAGAAATGGAGACTAAATGGTTATTGGCAGCATAGGAATCTGATAGAGGAAAAAGAATATATGTTTTTTGGCCGGGCCCAGTGTCTCATCCCTGTAATCTTAGCACTTTGGGAGGCCAAGGCAAGTGAATCACCTGAGGTCAGGAGTTCGAGACCAGCTTGGCCAACTGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTCCTTGAACCTGGGAGGCAGTGGTTGCCATGAGCCGAGATTGCACCACTGCACCCCAGCCTGGGCGACAGAAGGAGACTCCGTCTCAAAAATATTTATATGTATATGTGTTTTTTTAAAAGTAGGGAGGTATTGGTTAAATTAAGGGAGAACTCCTAACTCTCAAGTTGAGAAGAAAGAAAAACAGGAAGAAAGTAGTGGACTGGATTGTCTTCCCTGGAGTGCATCGTGTTGTGATCCAGAGAAGTAGAAGCTATGATAAAATAATTTCTGTGGATCATGTTAAATATCATAACCCCCAGATCTTTCTGCTGTCACTCTTCTTTTATAG
Seq C2 exon
GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTCACACAGTCGGAACTGTATCCCATTTGCCGGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379:ENST00000271640:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(55.4=100)
A:
NA
C2:
PF150571=DUF4537=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGGAAGAAATACAAGGT
R:
GCCGGCAAATGGGATACAGTT
Band lengths:
273-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains