BtaINT0131666 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19858780-19859735:-
Coord C1 exon
chr3:19859534-19859735
Coord A exon
chr3:19858854-19859533
Coord C2 exon
chr3:19858780-19858853
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CCATCACTCTTTCCTTACAGGTT
3' ss Score
11.79
Exon sequences
Seq C1 exon
GGTCAGGGAAGAAGTACAAGGTGAAATTTGACAACAAAGGAAAGAGTCTTCTGTCAGGAAACCACATTGCCTACGATTACCACCCTCCTGCTGACAAGTTGTATGTGGGCAGTCGAGTAGTGGCCAAATACAAAGATGGGAATCAGGTCTGGCTCTATGCTGGCATTGTAGCTGAGACACCAAACGTCAAAAACAAGCTCAG
Seq A exon
GTACCTAGACAGAAGATTGTAAAGAGAGTGGAAACCAGGAGCACATCATCTGCCCTGTTTAAGCCATAGCCCAGATCTCACAGTTAGCTCTGATGTTCTTAGTCCTTAGTGGCTGGAAACTCTCTTTTCTTTGCCACAGAGTCATGTGGGTGGTTCTTTCTTGCTCCCTTTCCCCCCTTTTTTTCCCTTTTCCCTTTTCTCAAAGAGAAAATTTGGTCAGGGGAGAGTAATCCAGATTGATTAATGGTTAGGGGAATAGAGAATTCATACAGAAGGAAGAAATGGAGACTAAATATTTTTCAGCAATGTGAGAGTCCAATAGTATAACAAGAATAAATCACTTTTGGGAAAGTGGGGATATGTTGGTTAGATTAAGGGAGAATTCTAATATTCTTTTCCATTATGATTTATTACAGGATATTGAATATAGTTCCCTGTGCTATACAGTGGGACCTTACTGTTTATCCATTCTATATATAATAGTTTGCATGTGCTAACCTAAGGGAGAATTCTTAACTCTTGGGATGAGAAGAAAGACTAGTAGAAAGAAAATAGTACACTGGAACATGTTCCCTGGATTGTGTCTTGTTTGTGATCCAGAGGAATGGAAGCTATAATAATTTCTGGTCATGTTAAATATAATAACCTGCAGTCTTTGTACCATCACTCTTTCCTTACAG
Seq C2 exon
GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTGACACAGTCTGAACTGTATCCCATTTGCCGGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(54.0=100)
A:
NA
C2:
PF150571=DUF4537=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGGGAAGAAGTACAAGGTG
R:
GCCGGCAAATGGGATACAGTT
Band lengths:
273-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]