GgaINT1003171 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1734869-1736336:+
Coord C1 exon
chr25:1734869-1735070
Coord A exon
chr25:1735071-1736262
Coord C2 exon
chr25:1736263-1736336
Length
1192 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
TTCCCTGTGCTGTTGTGCAGGTT
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGCTGGTAAGAAGTACAAAGTGAAGTTTGACAATAAGGGGAAGAGTTTGCTTTCTGGCAATCACATTGCTTACGACTACCACCCCTCCCCAGACAAACACTACGTTGGGAGCAGAGTTGTGGCAAAATACAAAGATGGGGATCAAGTTTGGCTGTATGCTGGCATAGTGGCCGAAACCCCAAACGTGAAGAACAAAGACAG
Seq A exon
GTATTCATTCTCTACAACCATTCTATTTTATTCCTTTTTTTTTTTTCCCCAATTAGAAGGAAGGAAACGTGCTGAAGTGGAAGCTAAGTTGCTTTCTGACCTCCCCAGGGTAGTGCTCAGCGTTGTTTCTTCACTTTGTCTTATCCATGAAAGCTTTGGGTGGAGCTTCTGTTGCATTACTCAGATCCCTGAGTCAGAACTTGTGTTTGGTAATTCATTCAAATGATCATGCAGATATCAGCCTGCACTGCTCAGGGCACGGAATGAAGAAAGCGGAGCCCTGGAGTGTTTTGTGCCAGAAGTGCTGCCTGGGCACGTAATGAGAAGCAGCAGCAGGTCTAAAGCAGTCCCCCGAGCTGCGTGCACACGAGAGGCAGTGCTCCTTGGATGTGGTTTTTGGTTTGTGGTCTTTCTAAGAAGATTGACAGAGGATTTAATCACCCTCCCACGCTCCGCCCAACCGTGTGAAGTTCCATCTGATAAGTGTGGGATATCTGGGCAGAGCGCTGTGCTCTTTAAGTCGTGTTGTAAATGTGCTCCTCCTGGCTGTTCTGCTGATCTCTCGTAACCCTGACACAGCCCTGCATCCAAACTGTTACTTGGGGGCACGCTTTTATTCTTATCTCTTTTCCTTACTGCTGAGCCGTGCAGTTCAGCCTCATGGGTTCAGCCATCTCCCCTCCAGCCCCGGGCTCTTCCACACACACCTCCTGTGTGCAGGTGGAGTTGCCCCCCCCCAGCTTTCCCCTGGTGCTGCTCTCAGTCACAGCATGCAGCTCTTCTGCTGCCGTGTCCCAGAGGCTCTGAAAATATCTTTGTGGAGATTAGGAGCAATTAAACTGTTTGTTTTTCCCCACCGTTTTAGCTCCTGTGCTGGAGGCACAGAGGTTTGGAGCTGGGGGGAGAGGGCCTGGCTGTGCTGTGCTGCTGGAAAGCCTTTGGGCAGCTTCTGTGTGTTCTCTTTGGGAGTGCAGATGTAGCTCAGGGCTGGGGAGAGTGGTTCAGAAGCACTGAGGGAAGCAGCAGTGCTGCACAGCCTGGAGCTCTGGGCAGGAGCGAGCAGTGCTGTCCATCCTCATGTGCCACGCCTGACCCAGGGCACTCGGAGGTGGCAGAGTGGGGTTTCTCTGCTTTCATTCGGTGGCGTTTCTAAGCCCAACGCTGAACACGTGTTCCCTGTGCTGTTGTGCAG
Seq C2 exon
GTTCTTGATCTTCTTTGATGATGGCTACGCTTCGTACGTCAAGGAGTGGGAGCTGTACCCGGTCTGCAGGCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051:ENSGALT00000040574:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150571=DUF4537=FE(54.0=100)
A:
NA
C2:
PF150571=DUF4537=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGTAAGAAGTACAAAGTGA
R:
CTGCAGACCGGGTACAGCTC
Band lengths:
271-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]