HsaINT0148382 @ hg19
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50062426-50065046:+
Coord C1 exon
chr13:50062426-50062766
Coord A exon
chr13:50062767-50064957
Coord C2 exon
chr13:50064958-50065046
Length
2191 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TGTTTATTTTTATTTAACAGCAT
3' ss Score
8.62
Exon sequences
Seq C1 exon
AGGACTCAAGTTCAAACCATGTTGATGAGTTTGAAGATAATCTGCTGATTGAATCAGATGTGATAGATATAACTAAATATAGAGAAGAAACTCCACCAAGGAGCAGATGTAACCAGGCGACCACATTGGATAATCAGAATATTAAAAAGGCAATTGAGGTTCAAATTCAGAAACCCCAAGAGGGACGATCTACAGCATGTCAAAGACAGCAGGTATTTTGTGATGAAGAGTTGCTAAGTGAAACCAAGAATACTTCATCTGATTCTCTAACAAAGTTCAATAAAGGGAATGTGTTTTTATTGGATGCCACAAAAGAAGGAAATGTCGGCCGCTTCCTTAAT
Seq A exon
GTGAGTATAAGGGCTGAGATTCCTATTTCTGAACAACTGTTTTTTTCTATGCTACTTAACAAAATTATGAGGAAAATAAACAGACTCTAAAGTCAGACCATCTGGTTAGAATTCCAGTCCTCCACTTGTATACAGTTGGATGTTTTACTTGACCTCTGATACCTCATTTTCTACCTCTGTAATACAGGGATAAATGATAACTGTCTCAGGATGTTATGAGAATCTAATGAATTAACATTAAGTGCTTAGAACAGTGCCTAGCACATAGTAAACATTTGCTTTTAAAAAACTGTAAGAAATGGTGTATAAGAAAAGTATTTAAATATATCAGATTTAAATAAGCTCACTTACCTGAGTTGAAAAAAATGTATGGCTAGGAAGTTATCAGTGAAGTTAAATGGTGGCAGATATGTCCAAAGAATACTGCAGGGATTTAATGGTGTATTAATATGGAAAGATTGCCACAATATACTGGTTTTTTGGTTTTTATTTTTTGTTTTTTTTGAGACAGAGTCTCACTTTGTCACCAGTGGCACAATCTCAGCTCACTGCAACCTCCGCTTCTGGGGTTCAAGCAATTCTCATGCCTCGGCCTCCTGAGTAGCTGAGATTACAGGCGTTAATGAATCACATGATGAATGTGTGGAGATGGCGGCTAGTGGGCAACAGAGCAATACTGGAATAGTGCTAATATGAGGAAATGGTATCATCTATTTAGAAGCCTCGGAACGACGATACATAATGGCTATCTTCAGCAAAGAAATTTGTTGCTTACAATATCTCCTCTCCAAAAGGCTTGTTTGTTACAGTGATGTAAAAATTAGGTTCTGTACATCTTCATATTAAACTTACTTTGTGAAAACTTTTTGTTTAAAAAAAAAAAAAAAAGCCATACCTTGAGAAGTACTGTGCTCCTGTTCCCATGCCCCGACTCCACCTTCTCTCTGTAGGTCATCATATTTATTCTTTTTTTTTTTTTTTTTTTGAGACCGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGTGTGATCTCGGCCCACTGCGATCTCCGCCTCCTAGGTTCAAGCGATTCTCCTCATCAGCCTCCTGAGTAGCTGAGATTACAGGTGTGCACCACCATGCCTGGCTAATTTTTGCATTTTTAGTAGAGACACAATTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGGCCTTATTTCTCCCGCCCCCCCCCCCTTTTTTTTTTACATAAAACATAGCATATTATATTCACTGTTCTATACTTTGTTTTTCAAATTAACAGTATATTGGGCCAGGCGTGATGTGACTCATGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACACGGCAAAACCCCGTCACTACTAAAAATACAAAAAAAATTAGCCGTGTGTCATGGCACATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCATGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAGGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATCTTGTGGCAATTCCATATTAATACCCAGAGCTTCTCAAATTGTTTTTATTTGTATGCTTTTGTTTATAGCTGCATAGAATTCTATTGTGTACCAAAGTTTATTTAACCAATCTGCTTTAGGCAAATATTTGGGTTATTTCCAAACCTTTAGCACTAAAAACAATGCTCAATGAATAATTACACATGGAAACATATACAGATGAATCTGTGGAATACAATTCTAGATATGAGATTGCAGAATCAAAAGACAAATGCATTTATAATAATGATAAATATTGACATATTTTATAGGGATTTGTCCCATTTTTGCATTTCTGCCAGCAACATAGAAGAGCGTCAGAACAGGGCTTTTCTGAATGGGTTCCCACTATTAACAGGAGCTGTGATAATTTATACATTGACAAAAAAAGAACAAAATCAGTGTGATATATTAAAAACAGAATGGTTTTCTAATGCAAAAGCACAAGGCATCAGACTTTATGCTATTTCTAACCTTTGTGTTTATTTTTATTTAACAG
Seq C2 exon
CATAGTTGTTGCCCAAATCTCTTGGTACAGAATGTTTTTGTAGAAACACACAACAGGAATTTTCCATTGGTGGCATTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-SETDB2:NM_001160308:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(35.6=100)
A:
NA
C2:
PF0085623=SET=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)