MmuINT0142228 @ mm10
Intron Retention
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59406646-59409518:-
Coord C1 exon
chr14:59409178-59409518
Coord A exon
chr14:59406735-59409177
Coord C2 exon
chr14:59406646-59406734
Length
2443 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TGTTTTGTTTTGTTTAACAGCAT
3' ss Score
9.46
Exon sequences
Seq C1 exon
AGGACTTAAGTTCAAACCCAGCTGGAGATTCTGAAGACACACAGCTGACTGAATCAGACGTGATAGATATAACTGCAAGTAGAGAAGACTCTGCCCCAGCATACAGGTGTAAGCACGCAACCATAGTGGATCGTAAGGACACTAAACAGGTGCTTGAAGTCCCAGGAAAGAAGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGCCTTGTGTGATGAGGAGCTGCCAAGTGAGAGGACAAAGATTCCATCTGCTTCCCTGATGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTCAAT
Seq A exon
GTGAGTATCAGGGTTGAGATTACTATTTTTAAGCACTCATTTCTTTAAAGTTTATCAGGACATGTGTGTTGTTTCCTGATGTTTAATTCCTGCTGCTAATATGGGAGTAACAATTTGGGTTTTTTTGAGGATCATACTAATTTAATATAAATTGTTTGGAAGTGCTTACCATATAGTAAACATTTGCATTAGAAAACTTAAGAAATGTTGGGCATGGTGACTCATGCCTGTAATGCCAGCACTTCTCAGGCTGAGGCAGGTGAGTTTTCTGAGTCTTAGACCAGCCTGGGCTACATTGTGAGACCCTGTCTTTAAAACACAAAACAAAACAAAACAAAACAAACCATTAAACCAAAGAATGTCAGTACATCAAGAAGTTTACAGGGCTGGTGGATGACTCAATAAAGTGTTTGCCAAGCTAACATGAGGACCTGAATCTGGATGCCCGCACCCACATTTAAAACGAGTGTGGCTGTATGCATGCCTATAACCCTAGAACTCTTATGAGTGGAGACAGAAGGCTGGTTAGGTCCAGTTTCAGCGAGAGATACTGTCTCAAGGGATGATGGTAAAACATGAGCTGTGTACCCAAGATTCTCCTCTGGCTTCCTCATGCACATACACAGACATGTGCGTACACACAATACCACACACAGTATGTCTTATACAGACACACATATGCACACACACTCACACCCCAGGCATCATGACACACATACTTGTAATCCTAGTGCTGGGGAAAGATAGGAAGATGCTGGGGCTTACTGGCTTGCCTAGCCAATCGTCAAGTCCAGGTTCAATGAGACCTTGTCTCAAAAAATAGGGTTCTAAAGTATGAAAAACTAAGGTGAAGAGCAATCTAGACATCTGTCTTGACATTTGACTTACTGTGGAAGTACATGTGTGCATAAAATACACACGGTTTCCAAACAACTGTATAAGTTGCAAAAAATTGAATAGGAAATAATCATCATGATGCTAAATGATGTCCATGTACGAGGATATTGTAGAGGTTTGGTGGCCCTGTGAGTCTTATGATGGTAATAAAGATCAGTATTTGAGAAAACAGTGGGCAGCTAAGAATACTGGAATGGAGGCATTGAGAGTACCATTATGTTATGAGCCTTGGAAAAAGGTTATGTGGCTGTCTTGAGAGAAATCAACTTCTTTTTTTTTTAAGATTTATTTATTTATTATATGTATTTATTTATTTATTTTACATTTTTGAGACAGTGTCTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTGCCCAGTTAAAGCCTTCTCTTGAAAAGTATTATGCTATCAATTTCCCTGACCCCATTTTATAGCTCTTGTTTATTCTTGCTCTTTTTTTTTTTCTTTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTAGCTTTGCAAATACATTTATGGTGTTGGTTCTCTTTTATATAGCTTATTCACTTTGAGTGCATGGTAGCGACCTACCTGCACATGTGTTTGGGAGCCTGGGGTCAATCATGGGCATTGTTGCTTTAGTGCTATCCCCTTTGGTTTTTTAAAACAAGGCGATCCATTGGCCTGTATTTCACTAATCAGTCTGGGCTGTCGGCCAGCAAGCCCCAAGGATCATCCTGCCTCTACTGCTCTGGTCCGCATATGAGCATGAGCCACCACACCTGGATGTTTCACAAGGGGTCTGGAGATGGAGCTCAGGGCTCCATGCTTGCATAACAAGTACTTTGTTGACTGAGCTTTCTCTTATATTTAAACTTACAATACTATCCTGAAGTTTATTCTGTATCAGTACACGGGAGTTCCTGGTCCTCTCCTATTTTATACTCATATATGTTGTATGTGGGGGAGGGGATACACACATGCATGTGTGGAAGCTAGGGAATAACTTGGAGATTTGGTTCTCCCCTTTTTGCCATGTAAGTTCCGACTCAGATTATCCAGCTGGTTGGTAAATGGCTTTCCCCACTGAGCCATCTCACTGGGCCTGATTCTTCTTGTTAGCATGTGTCTCCCTTTACGCTGCATAGAATTCCATTTTGTCATTTTTTAGCTAGTTCCCAATAGGCAGGTATTAAGTTTACTTCCAAATGTGTCCTGGTTAAAAAACAATATTTATCAACAATCTTACACATAAATATCTGCGCAGATGGTCCTATACACAACATTTTAAATATAGTGTTGATGAGTCAGGAGATAAATGTGTTCATAATAAATAGCAATCCCCATTTGGGAGTTCTATGTTGACATTCTGTCAGCATGTCTGAATGGCTATACTAAATTGGTTCTTGCTATTAACTACATGGCTAAGAACTGTGGGAGATTGCATATTACTTAAACTGAGAAGGACAAAATCAGTGAGATGTGTAAGAAACAAGGATGCTATGTCTAACCTCTGGTTTTTGTTTTGTTTTGTTTAACAG
Seq C2 exon
CATAGTTGCTGTCCAAATCTCTGGGTGCAGAATGTTTTTGTAGAAACACATGACAGGAATTTCCCATTGGTGGCCTTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350:ENSMUST00000161459:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(36.7=100)
A:
NA
C2:
PF0085623=SET=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types