RnoINT0133866 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39715651-39718477:-
Coord C1 exon
chr15:39718137-39718477
Coord A exon
chr15:39715740-39718136
Coord C2 exon
chr15:39715651-39715739
Length
2397 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TTAATTTTTTTTTTTAACAGCAC
3' ss Score
9.2
Exon sequences
Seq C1 exon
AGGACTTAAGTTCAAGCCAAGTTGGATATTCTGAAGACAAGCAGCTGACTGAATCAGATGTGATAGATACAACTACCAGTAGAGAAGACACTTCCCCAGCATACGGGTGTAAGCACGCAGCCATATTGAATAGTAAGAACACTAAAAAAGTGCTTGAAGTCCCCGTAAAAACGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGTCTCGTGTGGTGAGGAGCTGGCAAGTGAAAGGACAAAGATTCCATCTGCTTCCCTGGTGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTTAAT
Seq A exon
GTGAGTATCGGGGTTGAAATTCCTATTTTTAAGCATTCTTTTCTTTAAAAGGTATCAGGAAGATAAGATTAATAGATTCTAAAGACAGAACAGACTACCAGAATCAGTCCTCTGTGTACCTGTGTGTGCGGTTTCCTGATGCTAATATGCGAGGAACAATCTTTTTGTTGAGGGTCATACTAATTAATATAAATTGTTTGGAAGTGCTTACCATACAGCAAACATTTCTGTTAGAGAACTCAAGTGCTGGGCATGGTGACTCACACCTGTCATCCCAATACTTCTCAGGCTGAGGCAGGTGGATTTTCTGAGTCTTAGACCAGCCTAGGCTACAATGTGAGAACCTGTCTTTAAAACACAAAACAAGACAAAAACAAACAAACAAAAACCATAAAACCAAAGAAATTACAGGGCCGGGAGGATGACTCAGCAAACTTACATGAGGACCTGAGTTTGGATCCCCGCACCCACGTAAAAAGCTTGCACGCCTATAATCCCAGCACACTCATGAGTGGAAGCAGAAGGGTGCTTAGGCCCAGTTTCAGTGAGAGCTGCTGTCTCAAGGGATGATGGTAAAGCATGATAGAACTGTGTACCCAACATTCTCCTCTGGCTTCCTCATGCACACACACAGGGTTATAAAGTATGAAAAACTAAGGCAAAGAGCAATCCAGACATCTGTCTGACATCTGACTTCCAGCTCCACAGACACACGCAGATGTGCATGCATGTCTTCACACGCACACGAGTGTATAAATAGACACGATTTCCAAACTCAGTTATATAAGTTGCAAAAAAAAATTAGAAATAATCATCATTGATGCTGAATGATGGACATATACAAGGATACTGTAGGGGCTCGGTGCCTCTGAGTCTCGTGATGGTAATAAACGTCAGTGTGGAGAAAACAGTGGGCAGCTAAGAAGTCTGGAAGGGCGTATTGAGATGCCGTTACGTTATGAGCCTTGAAAGAGGTTATGTGGCTGTGCTGAGACAAGTCAACTGCTTATACATGTCTCCGACAGTTTCAGGTGGGATGTGAGGATGATGCTGCATACACTCTGTGTGTTAAACTCTTGCCACACTTTTGTTTGTTTTCAGGGCCTTCCCCATTTATTTATTTATTTACCTTACATTCTTGAGACAGTGTCTCTCTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTGTCCAGTTAAAGCCTTCTCTTGGAAAGTATTATGCTGCCAGTTTCCCTGACTCATTCTATGGCTCCTGTTTATTCTTGTCCTTTTTTTTTTCCTTTTTAGCTCTGCAAATGCAAGTAAATACATGTATGGCGTTGGTTCTTTTCTATATAGCTTATTCACTTTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGCCTACTTGCACATGAGTGCCTGTGTATTAGGGAGCCTGAGGTCAATCAACCATGGGTGTTGTTCCTTCAGTGCCATTCACTTTGGCTTTTTAAAACAAGGTTATCGGATGACCTGGAGTTACTGATCAGGCTGGGCTGTCTGGCCAGCAAGCCCCAGGGATCCTCCTGCCTCTACTGCTCTGGTCCTAATATGAGCTTGTGCCACCACACCTGGATTTTCACATGAGGTCTACACGCTTGCATAACAACTACATTACTGACTGAGATATCTCTTCTACTCACCTTTGGGCTGACAGTACCATCCTGACGTTTATCCTGTATCAGTATACAGGAGCTCCTGGTCCCCTCCTATTTTTTATTTAGTTATTTACTTTGTATGTGGGGGAAGGGGATACACACACGCCACATGCATGTGGGAGGCTAGGGAATAACTTGGAAACTTGGTTCTCCCCTTTTTACCATGTATGTTCAAACTCAGGTCGTCTGGCTTACTGGTAAATGGTTTTTCCCACTGAGCCGTCTCACTGGACCTGATTGTCCCTGTTAGCGGGCTCCTTTATGCTGCATAGAATTCCATTGTATCAATTTTAACTAGTTCCTAATAGGCAGGTATTGAGATTATTTCCAAATGTTTCCTGTTTAAAAATCAATATTTATTAACAATCTTACACATAGATATCTATGCAGATGGTATATACAGAATATTTTTAATGTAGTGTTGATGAGTCAGGAGATAAGTGTATTTATAATAACATTAAGTACTGACAAACAATCCCCATATGGGGGTTCTATTTTGTATTTCTATCGCATGATGTCTGAATGGCTATACTAAATTAGTTCCTGTTATTAATTACACTGCTAAGAACTGTGGTAGATTGCATATTGCTTGACCCGAGAAAGGCAAAATCAGTGATATGTGTAGGAAACAAGGGTACTCACATACTTTCTAAATTTTATGCTGTGTCTAACCCCTGTTTAATTTTTTTTTTTAACAG
Seq C2 exon
CACAGTTGCTACCCAAATCTCTGGGTGCAGAACGTGTTTGTAGAAACCCATGACAGGAATTTCCCATTGGCGGCCTTCTTCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(36.7=100)
A:
NA
C2:
PF0085623=SET=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]