HsaINT0155822 @ hg38
Intron Retention
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136394249-136394878:-
Coord C1 exon
chr9:136394800-136394878
Coord A exon
chr9:136394331-136394799
Coord C2 exon
chr9:136394249-136394330
Length
469 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
ATGCTGTGGCTTCTCCTCAGGGA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGGCCACCTGCCAACGAGGACACACGAGAGAAGGCTGCCCAGGGGATCAAGGCTTTCGAGGAGCTCCTTGTGACCAAAT
Seq A exon
GTAAGAGCCCTGGCCGGCCCTGCGGCACCCCTGAGCTTGGGACACCTCCCCATGGCCCTCCTTTCCCCAGTTTCTCCCCAAGTTCTCAGACCTCTCTCTGTTGTGACCTCATGGCTCCTTCAGGCCTTGACCACTGGGACTGGCCCCTTGACTCCTGCCTTTCCACACTGAGCAGGTCCTTTCCAGAACACCAGTCACGAGGGGCTAGCCAGGCCGCACCCCACCCTCTGGCTCAGTCTCCCCGCCCTTGTCTTGGGCCGCAAAGCCCTGTGGCTTTACGTGTGAGCTGGCGCCAGGCCTCGGGTGGAGCTCTGTCAGCTGGGTGGAGGGGCCACGTCAGTAGGTCTGGCGTGCTGCTTACTCGCTGTGGGGCCCCCCACCACTGCCTCGGGAAGTGCACACCAACCGTGGGGGCTGGGCCGTGGAGAGGATCCAGACCCCCAGTGATGATGCTGTGGCTTCTCCTCAG
Seq C2 exon
GGAAAAACTGGGAAAAGGCCTTGCTCCGAAAGTCAGTGGTGAGTGACCGCCTGCAGCGATTGCTTCAGCCCAAGTTACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684:ENST00000298532:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains