RnoINT0140865 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3821193-3821792:-
Coord C1 exon
chr3:3821714-3821792
Coord A exon
chr3:3821275-3821713
Coord C2 exon
chr3:3821193-3821274
Length
439 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
ATTACTCTCTTCCTCCTCAGGGA
3' ss Score
11.11
Exon sequences
Seq C1 exon
GGGCCTCCTGCCAACGAAGAAACTCGGGAGAAGGCTGCCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACTAAGT
Seq A exon
GTAAGAGTCCAGGCAGGCCTTTGGATGGGCGTCCTCCAACCATGGGAAGCACAGAGGGCATCCCCACAGCCTGGCCTCTTCTAGGCATATGCTATAATTCTCAGGCCTATCTGTGAACTCCTTCAGGACTTTATCACTGGGACTGGCCACTCGACATTTGGCCTTTCCAGTGTTGAGTGGAGTGCGGGCTGAGCCATACATGTAGCCTTCCCAACTCTAGCTATTCTCAAAACACCTAACCCTGAAAGGATACCTTGAGCTAGCCTTTGGGTGGAAGATGGACTCATGGCTGGAAGGGGTTCTGGCTAGCCACCTTACTGGCATCCAGAGATGAAGCCACTCCCTTTCTGGAGCAGGGGGCAGTGGGGATTCAGTGGACATGTATGTCTGTGGAGCAAGCAGAAACCTCATGACATCACATTACTCTCTTCCTCCTCAG
Seq C2 exon
GGAAGCACTGGGAGAAAGACTTGCTCCGGAAGTCTGTAGTGAGTGACCGCCTGCAACGCCTGCTTCAGCCCAAGTTACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]