GgaINT0126123 @ galGal4
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7894763-7895494:+
Coord C1 exon
chr17:7894763-7894841
Coord A exon
chr17:7894842-7895412
Coord C2 exon
chr17:7895413-7895494
Length
571 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ACTATTTTTGTTTTGCCTAGGGA
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGCCCTCCTTCCAATGAAGATGCCAAGGAAAAGGCAGCTCAGGGCATAAAATCCTTTGAGCAACTGCTGTCAACAAAAT
Seq A exon
GTGAGTAACTGTATGTGCTGTTCAGCGTTCTACAGGAAATATAATGTGTATGTAATCATCTTACCCATTTCTCCATACCTGTATTTAAACATCAGTGCTTACAGTACTTCATTCTTCAATTCACAGAAATAGTACTTCAAAGTAAATGGGAATTTATGCATTTATTCACTGTAGGATTAATGCCTTCCTTCCTTCTTTCATTTGCGTGTGTTTTGATGCATCATTCCACGTCACCCATGAGTGCTCCAAAACCAGATGGGATTGTGCAAGGGGAGTGCTCAGATGGGAGAAGAGATGCTTGGAGCTCTGGGTGTTCCATCCACCTGGGTGATGGTTTCATTGAGGTTTCTTTGGAAGTAAAACTGAGCAGGAGGTTGCAAGTTGTGCAGCTCGGACATGGCATTAGTGGTTTAGATGGGCAGCAGAATGAATTTACCTGGCTTCTTATAGGCCATCTGCAGAACAAAGTTGTGTAGGTAATGAAAATGAGCTCTTACTGAAGATGTGGGGAGTGCTCTGGCAGTGGTTTTGCACTGATGACGGAACGCTTGACTATTTTTGTTTTGCCTAG
Seq C2 exon
GGAAAAGCAAAGAGAAGGTGCTACTGCAGAAGTCAGTTGTAAGTGACCGCTTGCAGCGCCTGCTACAGCCCAAGCTCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]