GgaEX0002318 @ galGal4
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7894763-7896434:+
Coord C1 exon
chr17:7894763-7894841
Coord A exon
chr17:7895413-7895494
Coord C2 exon
chr17:7896330-7896434
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTATTTTTGTTTTGCCTAGGGA
3' ss Score
8.2
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCCCTCCTTCCAATGAAGATGCCAAGGAAAAGGCAGCTCAGGGCATAAAATCCTTTGAGCAACTGCTGTCAACAAAAT
Seq A exon
GGAAAAGCAAAGAGAAGGTGCTACTGCAGAAGTCAGTTGTAAGTGACCGCTTGCAGCGCCTGCTACAGCCCAAGCTCCTGAA
Seq C2 exon
GTTGAGTTACTCGAATCAGAAGCTGGAAAACGTCAAGACTGAAATGGAGAAACAGATCTTGGAGAAGCAAATCAAAGAAGTGGAACGGGAAATAGAGGCAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGAAGATGCCAAGGAAAAGG
R:
TGCCTCTATTTCCCGTTCCAC
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]