RnoEX6015967 @ rn6
Exon Skipping
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3820471-3821792:-
Coord C1 exon
chr3:3821714-3821792
Coord A exon
chr3:3821193-3821274
Coord C2 exon
chr3:3820471-3820575
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATTACTCTCTTCCTCCTCAGGGA
3' ss Score
11.11
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGGCCTCCTGCCAACGAAGAAACTCGGGAGAAGGCTGCCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACTAAGT
Seq A exon
GGAAGCACTGGGAGAAAGACTTGCTCCGGAAGTCTGTAGTGAGTGACCGCCTGCAACGCCTGCTTCAGCCCAAGTTACTGAA
Seq C2 exon
GCTTGAGTACTTACAAGAAAAACAGAGCCGAGTCTCCAGTGAGTTGGAAAAGCAGGCCCTGGAGAAGCAGATTAAGGAAGCAGAGAAGGAAATTCAGGACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCAACGAAGAAACTCG
R:
TGTCCTGAATTTCCTTCTCTGCT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]