HsaEX6064002 @ hg19
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:11137]
Coordinates
chr9:139287125-139289330:-
Coord C1 exon
chr9:139289252-139289330
Coord A exon
chr9:139288701-139288782
Coord C2 exon
chr9:139287125-139287229
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTGGCTTCTCCTCAGGGA
3' ss Score
8.37
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGGCCACCTGCCAACGAGGACACACGAGAGAAGGCTGCCCAGGGGATCAAGGCTTTCGAGGAGCTCCTTGTGACCAAAT
Seq A exon
GGAAAAACTGGGAAAAGGCCTTGCTCCGAAAGTCAGTGGTGAGTGACCGCCTGCAGCGATTGCTTCAGCCCAAGTTACTGAA
Seq C2 exon
GCTCGAGTACTTGCACCAGAAGCAGAGCAAAGTCTCCAGTGAGCTGGAGAGGCAAGCCCTGGAGAAGCAGGGCAGGGAAGCCGAGAAGGAGATCCAGGACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.000 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139211=Myb_DNA-bind_6=PU(13.0=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGACACACGAGAGAAGG
R:
TGTCCTGGATCTCCTTCTCGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)