BtaEX0033911 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103901330-103902577:-
Coord C1 exon
chr11:103902499-103902577
Coord A exon
chr11:103902121-103902202
Coord C2 exon
chr11:103901330-103901434
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCATCCTCATCTCTCTGCAGGGA
3' ss Score
9.51
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGGCCTCCTGCCAACGAGGACACGCGGGAGAAGGCTGCCCAGGGCATCAAGGCTTTCACGGAGCTCCTGGTGACCAAGT
Seq A exon
GGAAGACCTGGGAAAAGGTCCTGCTCAGGAAGTCGGTGGTGAGTGACCGCCTGCAGCGGCTGCTCCAGCCCAAGTTGCTCAA
Seq C2 exon
GCTGGAGTACTTGCAGCAGAAGCAGAGCAGGGCCACAAGCGAGCTGGAGAAGCAGATCCTGGAGAAGCAGGCCAGGGAAGCGGAGAAGGAGGTGCAGGACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054-'6-7,'6-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCCAACGAGGACA
R:
TGATGTCCTGCACCTCCTTCT
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development