HsaINT0163609 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160053119-160055564:+
Coord C1 exon
chr2:160053119-160053304
Coord A exon
chr2:160053305-160055485
Coord C2 exon
chr2:160055486-160055564
Length
2181 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CACCTTGCCACTTCTGACAGGTG
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCGCTTGTCCACAGTGCCCTACGGGGCCACGGTGACATTCTCCAGTACCTGCTGACTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAGAGCCACGCCCTGCAGCAGGCGCTGACCGCGGCGGCCAGCATGGGCCACAGCTCG
Seq A exon
GTGAGTGGGGCAGGGGTTTCCCTCCTGGGAAACAAGAAGCTGTAGCCCAGCAAGTCAGTTGACACACTGAAGGACCGAAAGAAGGAGGATGCCAAGAACTAGCATTTGGCGTTGACCACCTGCAGTAGAAGGTCTTCTATGGGCACCACATCCTTCCCGTGAGTGACAGTGCACACTCCTATGCACACGTGATGGGGACAGGCAGGCTTATTTTTCTATGGGAAGCCTTTTGATGACATTCACTCTCAGCTCTTCCTCATGTCTCTCCTCCTTCCCTGCTCTGCCCTCTAGACCTGCTGTTTTAAATTTTTTCCCCTTTGATTCGTTTCTTCTGTCCTTGTGTTCATTTAAAAATAATCACATAGAATCCTGATTCTAAAATCGTTCCTGAGTATTTGAAGGATTTTTAAAAATAGAGCTTTAATGCTTTGATAGCACACAAGAATGCTTGTCATTTACAGCTCCTCCACTGAATGAAAACTCCATGCAGTAGTTAAATAGAGCATTTATTTCTGACAGATGTTGGTATTCCTCAGTTTGAAGATTTAATTGTCACCTCCTGACCTGTGTGTCTTGGCTTTCTTTATCTGTGAATTTAATAATGTTTTGCTCGCTTCCTCCTGTGTATTTCTTACTCTGAATTATCTTCAAGCAATTAGAGGTGCCAGTATTTGGTAAGATTCTTTTTCTAAAATGACTTTAGTAAATTCGAGTGGGAAGCTGGCTGGCTGACTTTGGCATTCAAAACTCATGAGCGGACACACACACAAGCATGAAATAGTGGCTGGCTAATTTCTGGTTTAAACATTAAACACACACACACACACACACACACAGAGAGATACTGTTAAACACACATATGAAAATGTAGATGTTTTCCTTTTTTTAAGTGTGAAAAGTCATCATTGGGAGGACCATGAATGCCTAGGAATGACCTTGGTCTTAATCCATGCTAACCCCCTTGTTTTAAAGCTGGTTGGGAGGAAATGCTGAGCGAAAATCACCTCAGCACAGCCAGTAGGGTGAAAAAAGCAGGGTTTGTTCACCATAAGACTTGGAGGGTATGTTAGTTTCCTAATGCCATTATCACAAATAGATGCAACCTTAGTGGCTTAAAGCAGCACACACTTACTCTTAGAATTCTGATGGTCAGAAGTCTAAAATCACACTATTGGGAGGTCAGCCTTCCTTCTGAAGTCTCTAGGGGAGAACCTGTCTCCTTGCTTTTTCTCAATTCTTGAAGCCACCTGTATTTTTTAGCTCATGGCCCCTTCCTCCATCTCCAAAGTGCCTTACTTTCACCTTAGCCTCTGTCGTCTCATTTCCTCTGTCCTCTGACCTGGACTCCTCCTGTCCCTCTTAAGAGGATGGTTGTGATTGATTAGATCAGGTGTGTATCAGATATAGACCTTGATAATTTGAGATAATCGCCCCATTTCAACATTCATAATCACATCTGCAATTCCTTCTTGCCCTGTAAGGTCACATTCACAGGCTTTGAAGATTGGGATGTAGACATCTTTGGGGGCCATTATTCAGCCTACCACAAAGGGTGTGGGCTAGGAGACTGGAAGGTGGCTTTGTCGTGTTCTCCCGTTGCTCGCTGCTGTTGCTCAGGGTGAACGCCGGCTCAGGTCCAGGGCACAGATGCCTTGTCTCCCTGCAAGCCAGGCTTCCTGCCTCCATACCTGTGACTTGACCCGCCCTTTGACAGGAAGAGTCCCATAAGGGAAAAAGAATAATGCTACCAGCAGAAAATGTATTTGAACAATACTTTGTAAAAATTTGCAAAAACGTATATCGCTTTGTTTTCCTTCCTTGTGAAAAACTGATTCACTATCTTGTGATTTATGCAGAAACTGCACTTTGTGTGATCTGCCATGTCCTTTGTTGATTAGGCTGGCATATTTGGGTCATGTTGGAATTCATTAGAATTCTGAGTACCTAGTAATCCTGAACCATATTGCTGAAATTCACTGAGATTTTTTTTTAATTCTTCTCCAACTGAAAGTGTGAATAGCATATGAATTATGCTTGAAAACAGTTTTCATTATATTTTTCTCTCCTTGGGCAGTGTGAGATAATGGTTAAAAAACAACACACTGTCTCCTTTGATACATGGGCTATAATAAGCACCTCTTGCTAAGAGAACTCATTAAATCACCTTGCCACTTCTGACAG
Seq C2 exon
GTGGTCCAGTGCTTGCTGGGGATGGAGAAGGAACATGAAGTAGAAGTCAATGGCACCGACACATTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:18
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.4=6.5),PF127962=Ank_2=PU(47.6=80.6)
A:
NA
C2:
PF127962=Ank_2=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)