GgaINT0046915 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38151546-38152609:+
Coord C1 exon
chr7:38151546-38151731
Coord A exon
chr7:38151732-38152530
Coord C2 exon
chr7:38152531-38152609
Length
799 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
AAATCTGCTGGTTTTGACAGGTG
3' ss Score
7.21
Exon sequences
Seq C1 exon
GCTGACTATCTAGACAAAAAAGGGCAATGTGCTTTGGTCCACAGTGCACTGAGAGGGCATTGTGATATCCTTGAATATCTTCTGAATGTCGCTTGGGCAGCTTCTTCTCAGGAGCAAAATTCACTAAGAAAAAGCCAAGCACTGCAGCAATCACTGACAGCAGCTTCCAGTATGGGACACTGTCAG
Seq A exon
GTAGGTTGATAATTGGCATATTTCCAAATCTGTTGGAATTTATTAGAATTGTACTACAGTATTTGCAGTTTTTTTTTTTTTTTGAAGGGTTTGTAAAGCAGAATTGTTGAAACTTCTGATATTTTAAGTATTATGCATTCCTAGTAACTCCTTTAAATGCTGTAATTAAATATCCAATAAAATGAATTGCTTCAGAATTTTGTCTGCATGTAATTCTCTGTCTTTTTCATTGCTATTCTTGAAGTTGTACTCAGTCTCCAGTGGTAGTGATAATATTCAATGTTTCACAGTATACATTTGAAGATTCTGAACTGTGATCAACTTGAATGATTAATTCATTCTAATAAAAAGTCTTATTTGTTACCCAGTGGTGAAAGTGAGAGCAGCCAACTACTCAATTATGAGAAAAATTGATCTCATCTATCATAAAAAAATTATGATGAAGTCCACCTACTTTTAATTCGTTCCTCTTAGCTAGAAAAACGTTTCATTAATTTTAAATAAATTACATTCTGCTATTTTACATTTTAGTGTTTTCCATACGTTCTGTATAGCACTTCTCATGCATCCTGAAAATATCCATATTATCCATATAGTTTCGCCTTTCCTATCTTTGCTTTTTCCTTCAGCAAACAAAAATGTAGTGTGATTTTGCTCTCTTTACCTGCTTGCTGCAGCCTCGTTAACCATTTGTTTAAAATAGCCTTTAGAAGAGCTTTTAATTTAATGATCTTTTAGTAGCAAGTGGAATGTGGTTCGATGGGATTTTGTGGCTAACTAAATCTGCTGGTTTTGACAG
Seq C2 exon
GTGGTTTGTTACATCTTGGCAATTGAGAAGGAGCATGAAGTTGACATCAATGTCACTGATGCCTTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.3=6.5),PF127962=Ank_2=PU(47.6=80.6)
A:
NA
C2:
PF127962=Ank_2=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGCAATGTGCTTTGGTCC
R:
CTGTTTCTCCCCACAAGGCAT
Band lengths:
246-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]