RnoINT0147517 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45889747-45891933:+
Coord C1 exon
chr3:45889747-45889932
Coord A exon
chr3:45889933-45891854
Coord C2 exon
chr3:45891855-45891933
Length
1922 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CACCTTGCCACGTCTGACAGGTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCGCTGAGGGGCCACAGTGACATTCTCCAGTACCTACTGAACTGTGAGTGGTCGGCAGGCCCTCCGCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCAGCCGCCAGCATGGGCCACAGCGCG
Seq A exon
GTGAGTGGGGCTATGGTGTTCCTTCCCGAGACATGAGGCTTTGTGGCCCAGCTGTTCGGTCACAGCCTTCTAAGTTGAGAGCCACAAGCAACAAAGGGAAATGGAGATTTCAGAAAGTAGCCATTGACTCTGACTAATGAAGCGCCTCTCGTGCCACTGCCCTTGCCGTGAGCAAGGTGGTGGGCGGAATGCCCTCCCTGAGAGCTCTGGTGAGTGTCCTGTCTCTCCTGTTCTCACCTCCTCTCCTGTCTGCTCTTACCTGGTTCTTCCCTCCCGGTCCCTTCAGTTCCTGCTTTTGTCCCTATAGCCCGTAGACTACAGTCACATGGAACCCTAGTTCTGAAATCATTCTGGAGCATTTGAAGGGTTTTTAAAAATCAAGCTGGGATGCTCTGAGAGGCCGTGAGAATGGATGTTCATTATTTGAAGTTGCTGTGCCGAAGGAGAGATTCAACACTCCATTTCTTTCTGGGTGTCACTAGCTCTAGGTTTGAAGGTTTAATCATCGTCGGCTGGCCTGGTTCGCTGCCTTGGCTGCAAATATAACAACATTCGCTCCCATTTTGCTGGTGCTTCTCCCTCTTTGTTAGCTTTGAGCAATTGGAGATGCCAGTGTTTGGTAATATTCTTTCCCCCAGCATGACTGAGATTTGAACGCCAAGCTGGCTGGCTGGCACTGGCACGTACACACGATAGCAGATAAACATATAAGCATGTATTTCTGCCTGGCTAATACTTGGCATGCATAAATGACAGTGTTAAATACACATATCCGAAAACGCAGACGTTTTCCTCTAGCATTTGTCTCAGTTTTTAAAACAAGACCTCAAATAGCCTAGTCTGTAATTCTGGTTAATCCTGCCTCTGCCTCCCAAGTGCTGGGAGTCACAGGCTTGGGTCACCCTGCTCTGCCAACTCCTTCAGCTGCCCGAATCTGTGGCTCCAACATGGGAACAGTCATCTCTGGGAAAACTGAGGTGGGAAGAGACCAGGCTCCTCTCGAGGCTCCAGGAGAGGGCCTTTATGGCTTTGCTAGCTTCTAGAAGGCACTGCCTTCCTGGTTGTGTCCTCCATCTTCAGTGTACATGACCTCCCTTGCTGCCCCTTCTTTCTCCCTCCTCTGACCCAGACGCCTCCTGTCCAGTCTAAGAATGTTGTGGTCATAGCAGGTTTGCAGCAGGCAGGACCCCCAGACTGTGTACCCACAGAATTGCTTCATTTCAAGGCCTGTGATTTCCTCCTGCCATTTACGGAGCTCGGAGCTTCCACGGATTAGGAATAGGCCCAGTCAGCATTCTGTAAACACTATGGATTGGGATCCTGGAAGATGGCTTTGTCTGTGTCTCCTGTCACTCAGGACGATGCTGGCTCTGGTCCAGGGCACAGATACTTCATCTCCCCAGGGGCAAGCTTTCCTGCCTCCAGCTTGGGACCTGCTGTGCTTTTTAACAGGAAGATGCCCGGAAGGGAGAGGCACAGAGCTGTCAGTGGAAAAATCGCCCCGAGACTACTGAAAGAAAATTTTCTCTGTAAAAAGAAAATATCACCTTGTTTTCTTTCCTCGTGAAGAATGGCCTAATGGTGATTTATGCAGAAGCTGCACTTTATGTGATCTGCCGGGTCCTTTGTTGATTACGTTGGCATATTTGGGTCATGTTGGAATTCATTAGAATTCTGAGTACCTGGTAATCCTGAACAGAGTTGCTGCAATTCCCTGAGATTGTTGTATTTTTTAATTCTCCCCGGTGAAAGTGTGAATAGCATACGAATGATGCTGGGAAATGGTTTTCATTATGTTTTCCTCACTTGTGCAGCACAAGATAATAATGGTTAAAAAACAACACTCTCTCCTTTGATCTATGGGCTATAATAAGCACCCATTGCTCTGAGAGCTCATTAAATCACCTTGCCACGTCTGACAG
Seq C2 exon
GTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAATGGCACCGACACATTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(38.5=56.5),PF136371=Ank_4=PU(21.1=19.4)
A:
NA
C2:
PF136371=Ank_4=FE(45.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCACTTGGATAAGAAGGGC
R:
TGTTTCTCCCCACAATGTGTCG
Band lengths:
262-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]