BtaINT0144997 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37264899-37267579:-
Coord C1 exon
chr2:37267394-37267579
Coord A exon
chr2:37264978-37267393
Coord C2 exon
chr2:37264899-37264977
Length
2416 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CACCTTGCCACTTGTGACAGGTG
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTGGACCACTTGGATAAGAAAGGCCAGTGCGCGCTGGTCCACAGCGCACTGAGGGGCCACGGCGACGTTCTCCGCTACCTCCTGACCTGCGAGTGGTCGTTGGGCCCGCCCCAGCCCGGCGCGCTGAGGAAGAGCCAAGCTTTGCAGCAGGCACTGACGGCGGCTGCCAGCATGGGCCACGGCTCG
Seq A exon
GTGAGTGGGGCCTTTCCCAGGGCATTCCCTGGGAAAACGGGAGCCGGGGGTCTGGGCCCTTCCCACTCACCTTCTTCCAAGTCACCTGCTTGTGATGCACTGAAGGAATGAAGGAAATGAGGGTTTCCAAACAGAGCCGTTGGTCTCACCACGTGTAAAGGTGTTCTGTGGTTACCACAGCCTTCCTGCGAGTGGAAGGAGCCCCTCCAGGGCACGCACTCTCTGCCCCACCTTGCTGCTGCTTGTCTTCCCTCCTTGTTCTGTTTTTACCTTCTAGTCCTGCTCTCCTCTCCTTTTCCCGCTTTGATTCATCCTCTTGTCCTTGTGGTCTTTGAACAATAATCACATAGAATCCTAATTCTAAACTTGTTCTTGAGTATTCCAAGGATTTTTAAAAAGAGGTGTTTAAAATAGAACAGGCTCTGGTAGCATGTAAGCATGCTTGTCATCTACGGTTCCTGCACTGAAGGAGAACTTCAGGCAGTAGTTACATCCAGCACTTATTTCTGGCCGGTGTCAGTATTCCTCGATTTGCAGATTTTGTAGTCATCTTCTGACCCGTGTGTCTGTGAAGTTAATAATATTTTACCCTTTTTCTTCTGTGTATTTCTCACTCTGTAGTGTCTTCAGGCAATTAGAGTTGCCAATGTTTCTAAGATTCTTCCCCACAATGACTTTGTACCAAAGTAAATGTGCCAAATGTAAATGTACCAAATGTAAAATGTAAATGTACCAAAGTAAATTTGGGTACAAAGCTGGCTGGCTGACTTTTACCATTTAAGACACTGGAGCAGATACACACATACACGAAGCTAGCTGGCTTATTGTTGGCATTTAGAATGTCAAAAATGCACATGTACACTATTTCAACCAAGACAATATATTGCAGCAAGTTGAATACAGAAGCGTATAAGAAAAAGAAGCTATCTTCTCTTAGGACAGACATAAAAGAAATTTATAGAACTGTATAACAATGCTAGTCAAGTTAACTATGTTTTAGTTTTGGAGAAAATACTCTTTTTCATAAAAAATGAACAAAGCGCACATTTCATAAAAATGTATTAAACATTACCAGATAGTGGGTTTATTTTTTTTTAGATTAAAAATACAAAGAAATATTTTTAAAGACCCGTTTACATAGACACAGAGGGAACATGTTAAATCGACATATTTGAATGTGGATGCTTTTCCTTTTTAAACTGTTCCCTAAATCTGCATGGGTCCAGAAGGTGAAAAATCATCTTAGGAAGGACAGCGAAGCCACATTGGATGTGACCTTGGTCTCAGGCTGTTGTGAAACTGGCTGTGAGGAGCCGTGGGAAAGCAGCTGCATAGCCAGCCACTGCTTCATGGCAGAGGACAGGGCTCATTCACCACAGGCCTTGAGGGGCGTGTTAGTTTCCGCATGCTGTCGTAGTAAGTGACCGCAGGCTTCAGTGGCTTGAAGCAGCCTGTTCTGGAGGTCAGAAGGCTGAAATTTAGTTGGGTCAGGAAGCCGGTGTTTCTTTTGGAGGCTTCAGAGAAGAGTGTTTTCTCTTTTTTTCCTCTAGCTTCTAGAAGCCACCTCACTCCTTGGCTTAAGGCCCTGCCTCTGTCTTCAGAGTGTGCTTCCTGTCATCTCACCTCATCCTTCCCTTGGCCCTGGTTCCTCCTGTCCCTCTTATAAACAGCTGTGATCGTATCAAGTATGTATACAATATATGCTGTGATAATTCAGGATAATCATCCCATTTCAAGATTCGCAGTCACATCTACAAATCCCCTCTTCCCATGTAAGGTAACATTCACGGGTTTTCTGACTAGGATGTGGGGCCCTTATTGTGAGTGGATTGGGGAGCTGGAAGATGGCTGCCGGTGAGCAGGGTGGATGCTGGAGAGCAGGGTGGATCTGACGCTGGTTAAGGGCTCAGATACTTCTGGCTCCCTGCCCCCACCCCTGTGACCCACCCTGCTGTTTGACAGAGGGGAAAGAATAATGTGAGTGGAAAAAGCATTTGAAGCAGCATTATTTTATTGAAAGGTATATACATCACCTTATTTTCCTTCCTTGTGAAGAAAGGGATTCACCATCTTCTGGCGATTTATGCAGAAGCTGCACTCTGTATGATCTCCCCTGTCCTTTGTTGATGAGGCTGGCATATTTGGGTCATGTTGGAATTCATTAGAATTCTGAGTACCTAGTAATCCTGAACAGTGTTGCCGAAATTCACTTTTTTTTTTTTCTTCTTCTTCTCAAAGTGAAAGTGTGAATAGCATACGAATTATGCTGGAAAACCATTTTCATTATATTCTCTCTCCTTGTGCAGCATGAGATAATCATGGTTAAAAAACAACACGTTCTCTCCTTTGATACACAGGATATAATAAGCGCATATGGCTTTGAAAACTCATTAAATCACCTTGCCACTTGTGACAG
Seq C2 exon
GTGCTCCAGTGCTTGCTGGAACTGGAAAAGGAACATGAAATAGACGTCAATGGCACCGACACGCTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(38.5=56.5),PF136371=Ank_4=PU(22.4=21.0)
A:
NA
C2:
PF136371=Ank_4=FE(44.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]