MmuINT0156840 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59817485-59820285:+
Coord C1 exon
chr2:59817485-59817670
Coord A exon
chr2:59817671-59820206
Coord C2 exon
chr2:59820207-59820285
Length
2536 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CACCTTGCCACGTCTGACAGGTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCACTGAGGGGCCACAGTGACATTCTCCAGTACCTGCTGAACTGTGAGTGGTCGGCAGGCCCTCCCCAGCCTGGCACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCCGCCGCCAGCATGGGCCACAGCTCG
Seq A exon
GTGAGTGGGGCCGTGGGGGTTCCTTCCCGAGACATGAGGCTTTGCGGCCCAGTTGTTTGGTCACAGCCTTCTAAGTTGAGAGCCACAGGCAACAAAAGGGAATGGAGATTTCAGAAAGTTGCTGTTGACCCTGACCAATGGAGTGCTTCTAGTGCTGCTGTCCTGGCTGTGACCAAGGTGGGGGATGAAATGCTCTCCTCAGGAGCCCTGCTGGCTGTTCAGTCTCTCCCGCTCTCACTTCCTCTCCTGTTTGCTCTTCCTTTACCTGGCTCTTCCCTCCCGGTCCCTTCAGTTCCTTCTTTTGTCCCTATATATATAGCCTTTAGACTACAATCACATGGAACCCTAGTTCTGAAATCATTCCTGAGTATTTGAAGGGTTTTTAAAACTCAAGCTTGGGTGTTTTTAGAGCCCGTGAGAATGAATGCTCATTATTTGAAGTTGCTACACCGAAGCAGAGATTCCATGCTCTGTTTCTTCCTGGATGTCACTGCTCTAGGTTTGGAGGTTTAATCATCTTCAGCTGGCCTGGTTCTCTGCCTTGGCTGTGAACATAATAACGTTTGCTCCCATTTTGCGGGTGTTTCCTCACTCTTTGTGATCTTTGAGCAATTGGAGGTGCCAGTGTTTGGAAATATTCTTTCCCCAAAATGACTGAAATTTGAACGCCAAGCTGGCTGGCTGGCACTTGGCACTTACACATGATGGCAGATAAACATATAAGCATGTATCGCTGGCTGGCTAATATTTGGCATGCATAAATGATAGTGCTAAGTACACATATCTGAAAACGCAGACATTTTCCTCTTGTATTTGTCTTAGTTTTTTTTTTAAACAAGACCTCAAATAGTCTAGTCTCTGTAACTCTGGATATTCCTGCTTCTACCTCCCAAGTGCTGGAGTCACAGGCATGGGCCACCATGCTCTCTGTCTTGTTCTCCAGTCTCAATCTGTGGCTTCAACATGAGAACAGTCATCTCTGGGAGGACATGAGCACATGCACACCCACACATGATGCGCGCACGTGCACACACACACACACACACACGATGCACGCCCACACACGGTACACACACACACACGATACACATGATGCATGCCCACACACGGTGCGGTGCACACACACAATACACACACACATACACACACGGTGCACACACACACACATGATACACACACATGGTGCACACCCACACACAGTGCATACCCACACATGATACACACACACACATACACACATACACATACACGGTGCACACCCACACATGATACATACACACACACACGCTCGGTGCACACCCACACATGGTGCACACACACACATGATACACGCATGATGCACACACATACACGGTACACACACACACCCACACATGGTGCACATGCCCTGTGTATGGAATTGATTCTGTTTTTAAGTCCTGTGCCCCACTCAGGAGCTGGCCTGGAGAACACTGAGCAGAGCCTGCCTTGGCACAACCAATAACCAGTTCAAGCAGAAGTGCTAGAGGCTAGGAATTCTAGAATCAAAGTCCCGAAGAGGGTACGATTTCCTATCACCATCAGAGTAAATGCCCAAATGTTCTGCACACACTTAATCAGAAATCTAAAACTGAGATGAGCACAGGTCAGGCTTCTCTCTGAACGCTCCCAGAAGGGCCTTTATGGCTTTGCTAGCTTCTAGAAGCCACTGCCTTCCAGCTAAGGCTGCTTCCTCCATCTTCGAGTCCACAACCTCCCTTGCTGCCCCTCCCTCTTACTCCCTCCTTAGATCCTGATGCCTCCTGTCCAATCCTAAGAATGCTGTGGTTGTGCCAGGTAAGCAGCAGACTGTACACCCACAGAATTGCTCCATTTCAAGGCCTGTGATTTCCTCCTGCTATTTACGGAGCTTGGCGCATCCTCGGATTAGACCCAGTCAGCATACTGTAAACAGTATGGATTGGGAGCCTGGAGAATGGCTTTGTCCCAGTCGCCTGTCACTCGGGATGCTGCAGGCTCTGGTCTAGCGGGTACAGATACTTCAGCTCTCCTGCCTCCAGCTTGGGACCTGCTCTGCTTTTTAACAGGAAGATGCTCAGAAGGGAGAGGAACAGAGCTGTCAGGAGAAAAATCACCTGGACAGTACTGAAAGAAAAATTTCACTGTTAAAAGAAAATCGCACCCTGTTTTCTTTCCTTGTGAAGAATGGCCTAATGGTGACTTATGCAGAAACTGCACTTTATGTGATCTGCTGGGTCCTTTGTTGATTACATTGGCATATTTGGGTCATGTTGGAATTCATTAGAATTCTGAGTACCTGCTAATCCTGAACAGAGTTGCTGCAATTCCCTGAGATTGTTGTATTTTTTAATTCTCCCCAGTGAAAGTGTGAATGGCATACGAATTATGCCGGGAAATGGCTTTCATTATGTTTTCTTCACTTGCACAGCACAAGATAATAATGGTTAAAAAACAACACTCTTTCCTTTGATCTATGGGCTATAATAAGCACCCATTGCTCCGAGAGCTCATTAAATCACCTTGCCACGTCTGACAG
Seq C2 exon
GTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAACGGCACCGACACGTTGTGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(39.4=59.7),PF136371=Ank_4=PU(21.1=19.4)
A:
NA
C2:
PF136371=Ank_4=FE(45.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types