DreINT0160138 @ danRer10
Intron Retention
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11822327-11824806:-
Coord C1 exon
chr6:11824642-11824806
Coord A exon
chr6:11822409-11824641
Coord C2 exon
chr6:11822327-11822408
Length
2233 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TCATTGATGTGCATTCACAGGTG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTGGATCATGCAGATAAGAGTGGTCAGTGTGCACTGGTTCACGCTGCTCTGCGGGGTCATGCTGAGATCCTGCAGTATCTTCTGGAGCAGGACTGGAGCTCAGACCTGAAGAACAAGGCACTGCAGCAGGCACTAATTGCAGCCTCCAGCATGGGACACACACAG
Seq A exon
GTACTAAAAGCACACTCCCCAACCACACATACACACAGTAAACCATTACCAATCACATATTCCCTACATTTATTTAAAAAAAAAGGCATGGGATCCCCCATTTAAGCACTGATTAGGGGTTTGAAAAATGCTGTCAGAATGGAGATGTTCATGAAGGAGATGGAGACCACCAACACAACAGTCTGCAAATTCTGATGGTCTTATTTTGCTTTGATGGACTTAAAATCATCAGTTTTCCACAAATGGACACTTTATCGCAAATTTATCATTCATTTGCCATGGTATTGATATCTTGCTGTAGATTACAGCACAAAATTTCTCAGTTATATCCGCAGATGCTGCCATTAATACGGCGGTCAGGTCAAAAAATAGGTTGCATATTTACTTATGGGTGGGTCGCAGGTGGAGTGTTTTAAGCAATTTTATTTGACAGACTGGCACAAATTTGCAGACATCTCCATTCTCACAATGAGTATCTGACTTCTCTCAGCCTTTTGAATGAAATTTTTCTTCCGAGGTAACCTGAGAACACGTTTATTGCTGCTAATACATTGTAAAACCCTGTCTTGCTTATTCAAATTGCTTGACTAAACTAATTAAATTGAAACTCACTGGCAATAGATTGTCATTAAAAATGAAAAGTTTAATATAGGTTTTTCTGAAAATACTTCACTTTCACTTTATTTAGGCTAGATTTTATTTTATTTAACAAACCAGTTTGTGCTTTGGCGCAGAAGCACATCACCTCAGGTGTTTTTGGTTATTCTTGTTTATCTATTAGTTAACTGACGAACAAAAATACTTTAAAATTAAGATACAAATTATATAAAATGATATATAAATATCAATCTCCAGGAAAAATACACGTCCACTACTGAACTGTTTGGGTGGATGATTTGTTCCACTGTGGAAATTAAGGATTTAATTAATGCTTCACTGTAATAGTTGTATCACAAACCTCTGTCATATATTTGCAAAATATGTCATTATTTTAAAGAATATGTCTTGAGCACTTGATTTTTTCTTTGGGGCTGATGTGCTTTCATTTTCTCTGTGGGAGTGTTTAATAAGCAACCAATGGCTGGAAAATAAACATTTGGGTTTAAAAGAAAATATCTTAATATTAAAAAGGAAATATCCGTTTGATCCTATCAATGTCATCACGAATGCCCTTAATAATGTAGAAAACAAAAAAAAATTTAAAATAAGATAAGAAATATTGTTATAGCAACACTTGCTTTGGGAAATAACGCTCATTATAGACGTCATGGTATCACTAATCGTGAAGGAACATGTAGTGTGGCAAATTTGTTACCCACGACAAGTCAAGATTTTATTAAGACAAAATCACACAATCTGACATGGTGACTTTCATATCTGGCAATAAAAATCGTGTGGTCTGACCAGGGCTTTACTCAATGTTTGTACTTCACAATTCCTCTCACAGTAGAACACATTCTACTGAACTGTCCTGCTTTTAATGATTCCAGAAAACTTTTTTAGGAAATGAACATTTTTAGCAAAAAGACATTTTTAGCAAAGTGACACCAGGAAAAAAATGTAGAATCTTTACCATATATTAGCACCAAAAATCTTATTTAATTTATGAATTCATTTGTTTGTTGATTTTAATTGTATATGTAATATAAAAATGTTCTTGCTATGAAAATAGCCTTGGTTGCTGACATGGCGATAAACAAAAAATACATTACTTACTGCCCATGATCGCACAAAGTTCAGCTAAATATTTAAATGAAGAGTCTACTCATAGCATGATATCTCCTAATAATCATGAAAAACCAATGCTAGCCATAGTCATTATTTCCACATCAAAACAATGCAGATGTTAAGCTGAATATTAAAAAATATTTTCTGTAGAACTGTTTAGTAGTTGAATTAAACTCACTTAACTTCACATTCACACGTTATTAAACAGCTGATATTGAATCAACGTTGAGCTGAAGAATGCAGTTGATTTTAGAGCTGCTTTACAGTTCACATTGTATGTGTCATAATTGGCACTTGCGTAATTAATTCTCTCTTTACAGTAATTATTCTTCTGCATATTACTCTGAAACTTTTTTTTATTAACCTGTATTAGGTAAACAAACATGACTTCACCTCGACTTGGATAACAACACAGAACCCACACACACACACTCAACACCCACATACGAACATACAGTCATCTTGTATCTTGAATCATCGAAATGTCATTGATGTGCATTCACAG
Seq C2 exon
GTGGTAAAAAAGATGCTGGCGTTGAACAATGATGAGTTTTCAGTGCAGATTGATGGTCATGATACGTTGTGGGGTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073:ENSDART00000155090:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(41.1=70.9),PF136371=Ank_4=PU(28.1=32.7)
A:
NA
C2:
PF136371=Ank_4=FE(42.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]