HsaINT0163630 @ hg19
Intron Retention
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61473104-61476275:+
Coord C1 exon
chr17:61473104-61473289
Coord A exon
chr17:61473290-61476181
Coord C2 exon
chr17:61476182-61476275
Length
2892 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACACAACTTCTTGTTTCAGATT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGATCATTTGGATAAGAACGGGCAGTGTGCTTTGGTTCATGCTGCACTCCGAGGTCATCTGGAGGTTGTCAAGTTTTTGATTCAGTGTGACTGGACGATGGCCGGCCAGCAGCAAGGAGTATTTAAGAAGAGCCATGCCATCCAACAGGCCCTCATTGCTGCAGCCAGCATGGGTTATACTGAG
Seq A exon
GTAAGAAGTAGGCAATAGGATTGTTTTTTCAAGCTCTGTATTGAAGGACCCAGGAAACCAGGAGAAAAGATTGCACGAAGACAAAATTGCCAACCAAATTAATGTGAATTCGTGATCGCTGCTCTGAATAATAAGGAGATTAAACTCCATGAAGCACTTTACTCAAATGCCAAAGTCCCTCAAATTATAGGTATAGAAAGGTGCGAGTTGGAAAGGACCGTGGAAATGATATAATTATTCTCCATGTTTTCCTCCCTGTTTAACAGACAGTGGCACCAAGGCTCAAAGAGATGAATTATTGAGGTGTAGTCACATGGTTAGATAATGTGGCACAGGAACAGCATAACATTTAGAATCTCAGAAGGACCAGATTTGAGTCCCAGCCTCGCTATTCATTAACTCTAGCCCTTGAACAATTTACCTATCTCTTAGAAGTTTAGTTTCCCATCAGCAAAGTGAAGCTAATAAACTCCTTTATACAAGGCTGTTGTAAGGGATGCTTGGTAAACTGTTAAACATTATACAGTTTATTTATTAATGATAATAACAATAATAGTGGCAAATGTAGGGAATTGGTAGTGTGCTAGGAAATGTTTAACAACCAACTGTGAAGAGGGGTGTGGGGTGGAACAGGGGTGTGTGTTTGTGTGTGCATACGTTTATTATAAATTTTACTGATAGAATGTGTTGCCGTGGAATACTACACAGCCGTAAGAAGAACAAAATCATGTCCTTTGCAGCAACATAGATGCAACTGAAGGCCAGTATCCTAAGTGAATTAACACAGGAACAGAAAACCAAATACCACATGTTCTCATTGATAAGTGGGAGCTAAACATTGAGTACCTATGGACATAAAGAGGCAACAGTAGACACTGGGGACTACTGGGAGGGGAAAGGAAGGGGAAAGGGTTGAAAAAAACTGTTGTTATCCTCACTACCAGGTGATGGGAACTTTTGTGTCCCAAACCTCGGCATCATCCAGTACACCATGAAACAAACCTGTACATTCACTGCCCTTGAATCTACAATAAAATTTGAAATAATTAAAAAAAAAAAAAAGAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGAAGTTGGAGACCAGCCTGGCCAACGTGGTGAAACCCCATCTGTACTAAAAATACAAAAATTAGTCAGGCGTGGCAGTAGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGAATCGCCTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCATTGTACTCCAGCCTGGGCAGCAAGAGCGAACTCCATCTCAAAAAAAAACAAACAAACAAAAAGAATATGTTGCACACAACTTACAAATAATAATGAACTATATAATACTCTTAATTGAAAGCTTTTGTTGATTTTTGCCAAATTTTTAGCTAAACTGTGGTTGTAACTTATAACGAAAGTTTGACAAATGGAGCTGCATCCCAGTTTGCTCTTTTCTCAATAACTGTATTGCCGTTAAATCTGATATGTGATCTACTGTTAAACTACTTCTCGTCCACATACGAACTATATTCATTGAACTGAATCCTCTTTCAGCTTTAGCACTAAATGAAGCCCTGATTTATAATGTTTGCCAGTTTCAAGGGTGTAAATACTCCCATCATGGCCAATTTCAAGCTACCAGTGTGACATCACTGAAACAAAGAGGGGAGGAGAAGCATAGTAGCATGTTGTGATGTAATATTCCCACCATGCAGACAAGACATGCACAATCAATATAAATAACCTCAACAGCATAGATAATAGTAAGATATAGTTAAATAATAGGAAGTTGAGAGATTTGAGTATTCTTTAACCTTTGTTTTTAATGTTAATTTATTTAATTGCTATTTGATTTCTAATAAACAACTGGCTTTCAGAATTTCTGAGAATTTAACAGTCAGCTTTCATGGGCCAGTGCAAGCATGGGATAATCAGCAAAACAGCTACCATATCAATTGAGCTGACATGTCACCAAGGGAGTGTTAAGTAATATTAAATTTTATCATCTGTGGGAGGTTTTTGAACCGTGTTCAGTCAAATTCCCAGAAACAGAACTGTCACTTTTCATTGTGTTTAGAGATTTTTCTCCCTTTACTAGTTGCAGAACAGTCCTTATACATCTGAGAGGAAAAAGGAAGATAATCACTTTACTCTGAGGAAACACAGGGCCAGATGCAGTGGCTGACACCTGTAATCCCAGCACTTTGGGAGACCAAAGCAGGAGAATCACTTGAGGCCAGGAGTTCAAGACCACCCTGGACAACATGGCAAGACCCACATCTCTGGGGAAGAAAAAAAAAACTTTTTTAATTAGCCAGGTGTGGTGGTGCATGCCTGTAGTCCCAGCTAATCCGGAGGCTGAAGTGCAAAGATTGCTTGAGCCTGGGAGGTCAAGACTGCAGTGAGTCATGAACACATTACTGCACTCCAGTCTAGGTGACAGAACGAGACCCTGTCTCAAAAAAAAAAAAAAGAAAGAAAAACAGGCCCTCAGTTTTCTCGTATTTATTTTCTATGGCTTTTTTATAGGGAGGAGGAAGGATTGCTTCTTTAACTTAAATATGAAGAATATGTAATTTTTAAAAAATCACATGCTATATAAGTGAATTGCATTCTAGAGAAATGTGCAAACCATACCTGATAAGACAAATGCTCATCATGGAAGCTGTGAGTTTCTTTATTAGGACGGTCAATTCTGATTCCTTTTGTGTGCAAGAGATTTAGTGATACTTGGATCATCCAAGCATCTTCCAAACCTCACAGGCTAGTGTCAGTAGCATAGTTTTCCACCTGAAGTTTGAGCTGACACAACTTCTTGTTTCAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTAGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-TANC2:NM_025185:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(70.1=98.4)
A:
NA
C2:
PF127962=Ank_2=PD(14.3=43.8),PF0002325=Ank=PU(12.1=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)