DreINT0160164 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22661636-22663818:+
Coord C1 exon
chr3:22661636-22661821
Coord A exon
chr3:22661822-22663724
Coord C2 exon
chr3:22663725-22663818
Length
1903 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTTTTCTTATTCATTAACAGATT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GTGGATCATCTGGATAAAAACGGTCAATGTGCACTTGTTCACGCTGCTCTGCGAGGTCATCTGGAGGTGGTGAAGTATTTAGTCCAGTGTGAGTGGAATACAGACGGACAACAAGTTGGATCCTTCAGCAAGAGTCATGCAATACAACAGGCCCTCATTGCAGCAGCTAGTATGGGCTATACTGAG
Seq A exon
GTGAGTAAATAAAGTTCATCCAATAATGTAAAACTGTTCTTAGTAAACAGACCATCCAAGATGTAGGTGCCTTTTTTCTTTAGTAGATTTAGGTAATGCTTTGGGAAAACGGGTGATTCTTAAAATGCAAGTCAGCAGTTATCAGGTCAAAAAAAGCATACAAAGACAAGTCTAAGTGAATAACTTTGGCTCTAGGACACACTTAAAGGTCTTTTGAATTGAAACAATCAGTCTGTACGTTAAAACTGAACATTATAAATATGGCTTTTATCCAGAGTGTAAAGTACAGATTTGTGGGGGTTTGATCCTTTTAATTAATGCTTGGTGCAAAACGTCGAAACCTTATGAATAGTGCCCAGTGAATAGTGGAAAATAGTTTGCATGTATCTTTATCTTAAATAATGATGAACCTCTGCTGACTGCGCGCACCTCACATAACTAACGAGGCTTTTATACTTGCTGCTTTTGCTGTTGTTATTCTTTAAAACGACAGGGAGCGGTCAAAAAAAACTGACCTTCAGAAGTAGGAAGTTTCCCTTACTACGTCATATCATTAATATCATTCAAGATTTTTTGACTAATAATTTTTAGTATTTTTATTAATTATTTTAATAATTATAATGATTTTTATAACTATTCAAGATTTTTTTAAATACAGATACTTTTTTAGATTTAGCCTGCTCTGGCTAGTTTCTGTCCCATACTTATGCTAAAAAGGCAATAATGGTCCAACATTCCGTACCATTATCAGTTAAACCTAGAAAAGCAGGCTTCAGTTTATTGTAAAGTGATAGGTTCAAATATAAATGATTTGTTCTTTCATTTTAATTTTGTAACTATTAAATTGTTTTAAATTCAAAATTGTAATGTGTACATCAGTGTAAAACCTATGAATGGTGGTAAAACATATTTCTGTAATTGTGCTATGGCCTAGTATGGCTTGAACAACCTTATCTCTCAGGTTTTTCCAAACTGCTGTTGTAATTTCTAGCCAAGAATTATTGATCATCTGGTTATCTGTATGATCACGAATCATAAAGATGTCTGTATAGGCGTACATGTTTCAGACAAAATCTTTTCAAAATGGTTCATATTTAACTCAAATTAAACCTGATGATGTGTGCACTGTTCGCACGAGTCTCAAAAAAAAATCATGTGCCCCGCCAGCTGAAATCATGTCACGCGCACCCAAAGTGAACCTCCGCAAACACAGCGATGACATCACATTCGCTGTGCGCACTCAAGTGAACTAGTGGACACATAGATTATAAACCAGGCTTGAGTAATATAAATGTAAATTTCACTGCCCCTGTGATAGTTCATACCATTGTCAGAATATATTCAGTCGTTTTAATGAAACCAACAGATCCAGCCAAATGATAGACACTGCAAGTCTACAAAGACACTTTTGTAAAATAAGTGTTTGTATCTACAAATAGGCTAAAGGTAAAGTCAAATTAGACTTATAGTGTCTATTTTTAATAGATGCTATCATCCATATCGATGAAAGGATGCAAACTTGTCGCCGTTCGGCAAAATTCGGCATTATATAACAGTAATCTTTCAGTTATAAAAGGTAATCTTTGTGAACTGCATGTGTGTGTTAAAACAGTCCATCAGAGATTAATCCAAATATAATCATTATACCTAAAAACACTGAAAACTTCAATAAGTTCATTGAGTCATGCATTTGTATTACAAAAACTAAAGCTGATAATCAAATAGGCAATGTATAATTGGCACCCTGCTATTAGCTGTAATCCATACAGTCCCAAGTGATTTCTAGTCTACACAAAATTATCCTTTTGAACCAGTTATTTCTAATCACAGGTTCACCAGATCGACTTAACTATCCCCAAATTGTTTAAAGCTTGCTAATAACACTTTTCTTATTCATTAACAG
Seq C2 exon
ATTGTATCATACCTACTCGACCTGCCTGAGAAAGATGAGGAAGAGGAGGAACGAGCTCAAATAAACAACTTTGATACATTGTGGGGTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
A:
NA
C2:
PF127962=Ank_2=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCATCTGGATAAAAACGGTCA
R:
CTGTTTCACCCCACAATGTATCA
Band lengths:
279-2182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]