RnoINT0147542 @ rn6
Intron Retention
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94102879-94105118:+
Coord C1 exon
chr10:94102879-94103064
Coord A exon
chr10:94103065-94105024
Coord C2 exon
chr10:94105025-94105118
Length
1960 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACATGACTTCTTGTTTCAGATT
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTAGATCACTTGGATAAAAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCACCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCAAGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
Seq A exon
GTAAGAAAAAAGGGATAGGATTTTTCTCCAAAATTTTGTATTAAAGAACCTAAAAAAACTGTTAGGGGAAGATTTAAATGCTACAAAATTGCCAGCCAAATTGGTGCAAAGTTTTTAATCACTATTGTGAAGAATGGGGGATTAAATTCCACAAAGCAGTACTCACATGCTATGGTATCTAAAATTTTGTATGTGGAACAAACATGAAGGTCAGAAAGGAGTTTGGAAATTCTCACAGCTCTTCCCATACTTTGACACTAAGACACAGAGGAGTTACTGACCTGTGTGGACTTCTGTTCAGACATTGTGGGACAGGAAGGATACAACCCACAGAACCTTAAAATGGTTGATTTGGGTTCTAGATCATACAGTTTTCTTACTGCCTTAAAACCCTAATTTTCATCCATAAAGTTACTTAAGTGTTTTTAGAAGGCTGCTGTGAAGGATGCTCTAAATAATTAACACCATACAAATGATATTTTCTACATTATTAATAAGAGTAGCAAATTCATGGACTTGGTAATATTCTGTGAAAAGTTAAGTAACTGACAGTGAGGGAAAAAATGTAACCAAGGAGCAGGCACATACCTGCTTATGCTTAGTGTAAATTCTAATCTAAGGAATGGGTTACACAGTGACAGTGTTCTCAATTGAATGGTTAATTGAGTATTGGCTTTGGCCAAATTTAAATCTGTAGCCAAACCTGTGGTTGCAACCTAACTATGATGTAACAAGTAGAGTTGCATCTAATTTGCTCTTTTTCCCAATAATTTTACTGCCATTAAATCTGATTTTTTGATTTACTGTTAACTGTCTCTCACCTTTATGTAAACTCTACTGATTAAAATGAAACACATTTCAGGTTTAGCTCTAAACCAACCATTGATTTATAAAGTTTGTAACTATTCCTACCATGACTGACTTCAAGCTGCCAGGGTTTTATTGCTCGATATGAAGGTGGGAAGAAATGCACAGTGGCACACATGATAATGTTTCATCCATACAGATACAATAAATATAAATAACCTTAATATCACAGATGATAATAATAGGACACAGTTAAATAATTCAGAAATTCAGTTGAGGGACTTTGTTTTTGTGGTGTTGAGATCAAATCCAGGATCTCACACATTCTAAGCAAGTACTCTTACCAGTGAGCTGTGTCTCATATAATTTTTTTATTATTCTAGTTTTAATAAGTGACTGGATTTAACAATCAGCTTGTAAACTGGTGTGGTGGTGGTGCACAACTTTAGCCCTAGCACTCAAGAGGCAGAGGCAGGTTTATCTCTGAGTTCAAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAGACACTGTCTGGGGGTGGGGCGGAGATCAGCTTATAAAATTTCTGAAAATTAAAGAATCAGCTCTCCTGGCTCTCTACTCAGGAGCCTGTCCCACTGCGAGGGATGCTCCAGGGAGCAGCAGTCCTCTCAACTGGCATAGACGTCACCGAGTGACTCTGAAGCAAAACCGAAATTTGTATTGTCTGTGCAAAGTCTCCTAACTCCCGGTACATCAGATTCCTGCAGACAGGCAGTCCTCATACTTCTGAGAGAAAACAAGAAAACAATTACTTTAAGGAAGTATAGACCTCAGCTTTCTCCACATTTTTTTTCCTATGTCCGTATCAGGCATCATACAAGAGATTATATCATTGGCTTAAATAAGAAGAACGTGTAATTTTTAAATCACATGATATATGGACTATGTTAAATAAAATTATGAATACTGTCTGATAGGACAGCTTCTCTCAGTATGGTTTCTGTTTTCTTTGGTAAGGCGATCAGTACTGTTTTTTCGTATGTAAGAAGTATAGTGGTGCTAAGAGGATTGCCTTCTAGTGCTTCCAGATCAGGGACAGCAGCATAGCATCTCCTCTGCAGTGCGAGCTGACATGACTTCTTGTTTCAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTTTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840:ENSRNOT00000077280:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
A:
NA
C2:
PF136371=Ank_4=FE(49.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACTTGGATAAAAATGGACAGT
R:
CTGTCTCTCCCCAAAGACTGTC
Band lengths:
278-2238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]