GgaINT0143986 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2610181-2611155:+
Coord C1 exon
chr27:2610181-2610366
Coord A exon
chr27:2610367-2611061
Coord C2 exon
chr27:2611062-2611155
Length
695 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GACATGTCTTTTTGTTTTAGATT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTGGATCACTTGGATAAGAACGGTCAGTGCGCGTTGGTCCACGCCGCCCTCCGAGGACACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGAGCATGGCTGGGCAGCAGCAGGGGGTGTTCAAAAAGAGCCACGCCATCCAGCAGGCCCTGATCGCTGCAGCCAGCATGGGCTACACGGAG
Seq A exon
GTAAGGCTGCCAGCCCATCGCTCTCCATGGGACACCAAAGGTTAACCATACCAAGCAAGGGGGGCTGGGAGGTGGAGCCGTCATTGACTTGACTTTAGATTTTGCTTTTGTTCAGTGTAATCCATACAAACGTAGATAACGTGCTCAGATCAGAGGAGCTAATTAAAGAAAGCTGGATAATTGCTATTAGCTTGAAGTGACTGTGAGTCGAACCAATTAGAAGCAGATGTGACTTCAAAACCACACAGATCTGCACGCTGACATCATTTGTAACAGGGTGCAGAACTTTGCAAATGAGATTTTCCCCCCACACCATAGCAGTCACCTCAGGAACTTACAAAAGCAATTTCATGTTTGTTATACCCTAAATGCACGTGGCTGCTTACAGAATATACCTCAGGTCCCTGCTGGGAGGTGCTTGCAGGCACAGCTATAAGCTGATGATAAACTTGCTGAGTTTTCCAGCTTTGGTGATGGAATGAGTGTTGTGTGTGTCTATAACTGATCCTAATCACTGCTGGAGCCACTCCAGAGTCCTTGCAGGGATCTCTGGGAGAGTATTTGCTGGAGCTGAGGGTTCCAGGCAGAGATGCTGTGCCTTCTCCTCGGTGTATTCGGAGCAGTTCCTGTTAAGATGTCAGCAGTTTATCTGGAATGCACTGAGGTTTGTGAGCTGACATGTCTTTTTGTTTTAG
Seq C2 exon
ATTGTCTCCTACCTGCTCGACCTTCCAGAAAAAGATGAGGAGGAGGTGGAGCGAGCTCAGATCAACAGCTTTGACAGCCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATCACTTGGATAAGAACGGT
R:
GTCTCTCCCCAGAGGCTGTC
Band lengths:
278-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]