BtaINT0145021 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48379570-48382026:+
Coord C1 exon
chr19:48379570-48379755
Coord A exon
chr19:48379756-48381932
Coord C2 exon
chr19:48381933-48382026
Length
2177 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACACAACTTCTTGTTTCAGATT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGATCACTTAGATAAGAATGGGCAGTGCGCCCTGGTCCATGCCGCACTCCGAGGTCATCTGGAGGTCGTCAAGTTTCTCATTCAGTGTGACTGGACGATGGCGGGCCAGCAGCAGGGGGTGTTTAAGAAGAGCCACGCCATCCAGCAAGCCCTCATCGCTGCAGCCAGCATGGGTTACACTGAG
Seq A exon
GTAAGAAAGCAGCCAGTAAGGCTTGGGTTGTTGTTTCTTTTTTTTTTTTCAAGCTATGTCTTGAAGGAAACCAGGGAAAAAATAGTTGCATTATTACAAAATTGCCAGGTTAATATGAAGTAGCTTTTTGGTCATTGGTCTGAGAAATAGGGAGATGCCAGGGTACCTAGAATGATGTTGGAAAGGACCTTGGGAATTATCTAATCTGATTCCTCCTCATCTTCCACCCCTATTTAACAATGACACTGGGCTGGTGGGGGCGGGGGGTTATTCCTTGACCTTTGTTCACACAGGTGGGTGGAGTGGAATAGGGAGTTGGAATATCAGAAGGACCAGGTTTGAAGCTCAGCTTTCCTCCACGTTGGCTCTGGGCTCTGGGCAATGTAACTCATCTCTTAGAACCTTAGTCTCCCACCAGTATAGAGAGGCTTTCTAATAAATTCTTTTTTATAAGGTTGATATGAAAGGTGCTTTGTAAACTGTTAAACACTGTGCAGATGGTATTTTTGCCAAGTTATTTATTAATAAAAGTAATGTAGTGGCACAATATGTAGAATTGGTAGTGTGCTAGGAAATGTTTAACAACCAGCCTTGGAGAGGGGAGTAGAGAGCAGTAGGAATGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAACAGACTAATGAATTGTGTAATACTCTTAATTGAATGCTTTTGTCAATTTTTGCTAAATTTATATCCACACCCAACCCTGTGGTTACAACTCAACCGTGGTTTGATAAATGAAACTACCCATTTGCTCTTTTCCCAATAATTTTGTCTTTAAATCTGGTGTGTGATTCACTGTCAAACTACATTTTGCCCTCATACAAATTATATTCATTAAACTGGAACCTCTTTGAGCTTTTGCATTAAATCAAATCTTGATCTGCAGAATTTGCCAATTTCCAGAGTATAGAATTTGAGCAAACTCCAGGAGATAGTGAAAGACAGGGAAGCCTGGCATGCTGCAGTCCATGGGGTCACAAAGCGTCAGACACGATTTAGCAACTGAACAACAGCAGCAAATACCCCCACCATGACTGATTTCAAGCTACCAACACTGAACACAGAGTTTCAAAGAGATGCACAGGAGTACACCTTTATGTAAAACTGCCACCATGCAGACACAGTCAATATAAATAACCTCATGAGCATACATAATAGTAAAATGTAATTTAATAATTAGGAAGTTATGAGGTTTTATATTTTAACCTATTGATGTAATTTCTTTCATTATTATTTAATTTTTTTTTTTTTTCCTCTGCTGCTTGGTTTGTGGGATCTTAGTTCCCTGACCAGGGATCAAACCTGGGCCCTGGCAATGAGAGCAGAGTCTTAACCAGCGGGCCACCAGGGAATTCCCATCATTGCTATTTAATTGTTTTTAAATCCCTCCCTGTTATTTAGTTTTTAATAAACATCTTTGTTTAACAACCAGCTTGCAAAACTCCGAAAATTCAAGAGTCAGCTTTCACTAGCCAGGACAAGCTGGTTCACACTGCATGGGATGCTTCAGTGAGACAGCCACCTCTTCCACTGACCTGATATGTCCCCAAGGGAATATTAAGTAAAATTGGAACTTTGACTATCTGTGGAAGGTTGTTTAGTGCTCCTTATAGTCAGAGTCCTGAAAACAAAGCTGTCACTTGCCTTTGCTGTTAGCAGACATTCTCCTTTTACGGTCCCCAAACAGTCCTTGTAATTCCAAGAGGGAAAAAAAAAGAAGATAACAGCTCTACTCTGAAAAAGTACAGGCCCTCAGTTTTCTCCATATTTATTTTCTGGTTTTTGCTTATTGATTTTTTTTTCTGTTAGTTTTATTTTTTTTCTGGTAGTTTTATTAGGAGGGAGAAGGATTGCTTTTTTTTAACTCAAATGTGATAAATATGTATTTTTTTTAAATCACGGGCTGTATAAGTTAATTGCATTCAAGGGAAACATGTAGACTGTACCTGGAGAATGCATGCTCATCTTGGCAGCTTTGCATTTTTTTGTGAGGACAAATTGTTCTGATTCCTGTGGTGTGCAAGAGGGTGGCCCTGGGTTATCCAGATATCTCCCAAACCTCACAGGTTCACAGTATCAGTGTATAGTTTTCCACCTGAACTTCGAGCTGACACAACTTCTTGTTTCAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAGGTGGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249:ENSBTAT00000005565:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(36.4=51.6),PF136371=Ank_4=PU(20.6=21.0)
A:
NA
C2:
PF136371=Ank_4=FE(49.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development