MmuINT0156865 @ mm10
Intron Retention
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105899684-105902153:+
Coord C1 exon
chr11:105899684-105899869
Coord A exon
chr11:105899870-105902059
Coord C2 exon
chr11:105902060-105902153
Length
2190 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACATGACTTCTTGTTTCAGATT
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTGGATCACTTGGATAAGAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCATCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCACGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
Seq A exon
GTAAGAAAAAAAAAAGGACCTAAGAAACTGTGGGGCAAAGACTTGAATGATGCAAAATTGCCAGCCACACTGGTGAAAAGTTTTTAATCACTTTTGTGATGAACAGGGGATTAAACTCCACAATACTCTAATACTACGTACCTAGAATTATGTGCGTGGAAAAACTTAAGAGTCAGAAAAGAGTTTGGAAAAAAAAAAAAAGAAAAGAGTTTGGAAATTGTCACAGCTTCTCCCACACTTTCTGTGACACTAAAACACAGAGGAGTTACTGACCTGTAGACATATGGTCAGACATTTTGGGACAAGAAGGATGCACCCCACAGAACCTCAGAATGGTTGATTTTGGTCCAAGATGGTACAGTTTTCTTACTGCCTTAGAACCCTAGTCTTCATCCATAAAGTTACTGAAGTCTTTTTACAAGGCTGCTATGAAGGATGCTCTAAATAATTAATACCATACAGATGGCATTTTCTACATTATTAATAAGTGTGGCAAATTCATGGACTTGGTAGTATTCTGTGAAATGTTAAGTAACTGACAATGAGGAAAGGAAAAGACTATAACCAGGGAGCAGGTACACAGCTGCTTATGCTTATTATAAATTTTACTAATCTAAGGAATGGGCTACACTGTGACAAACAGTGTTCTCAATTGAATGGTTAATTGAGTGTTGGCTTTGGTCAAATATGAATCTGTAGCCAACCTGTGGTTGCAACCTATGATGTAACAAGTAGAATTGCATCTAATTTGCTTTTTCCCAGTAATTTTACGGCCATTGACTCTGATGTTGGATTTACTGTTAACTGTCTCTCACCTGTACTGATTAAAATGAAACGCATTGGGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAATGAAACGCATTTTCAGTTTTGCTCTAAACCAAACATTGATTTATAAAGTTTGTAACTATTGCTACCATGGCTGACTTCAAGCTGCCAGTGTTATGTCACTCAATATGGAGGTGGGAAGAAATACACAGTAGCACACGTGACAGCGTTTCATCCATACAGATGCAATACATATAAATAACCTTAAAATCACAGATGACAACAGTAGGACATAGTTAACTAATTGAGAAATTTTAAGAATTGAGGGACTTTTTTGTTTGTTTTTTGTGGTGTTGAGATCAAATCCAGGATCTCACACATTTTAGGCAAGTACTCTTACCAGTGGGTGCCAGCCTATAGTTAGGTATTTTTTAATATTTTTCATATAATTTCTTTATATTTCAAGTTTTAATAAGTGACTGGCTTTGTTTAACAATCACCTCGTAAACTGGTGTGGTAGTGGTGCACACCTTTAGACCCGGCATTCAGGAGGTAGAGTCAGGTAGATCTCTGAGTTCAAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTAGGGGTGGGGATAGGGACAGCGTGTAAAATTTCTGAAACATAGAATCAGCTCTCCTGGGTCTCTACTCAGGAGCCCATCCCACTGCAAGGGATGCTCCAGTGAAGCAGCAGTCCTCTCAGCTGGCCTTAGGGGTCGCCAAGTGAATATGAAGCAAAACTGAAATGTGTATTGTCTGTGGAAAGTCCCTTAACTCCTAATACAATCAGATTCCTCAAGACAGCTGTCACTTTTGTTTGTGGTTTGCAGTTATTCTCCCTCCCAGGCAGTCCTCATACTTCTGAGAGGAAACAAAACAATTACTTAAAGGAAGTATAGACCTCAGCTTTCTCCACATTCCTTTCCTGTGTGCTTATTGGGCGTCAGACAAGAGATTGTGTCATTGGCTTAAATAAGAAGAATATGTCATTTTTAAATCACATGATATATGGAGTATGTTAAATAAAAACATGTAAACTGTCTGATAGGACAGCTTTCTATCAGAATGGTTTCAGTTTTCTTTTGTAAAGCAAACAGTACTGATTTTTTGTGTGTAAGAAATTTAGTGAGAGGATTGCCTTCCAGATCAGTGCCAGCAGCGTAGCTTTTCACCTGCAGTGTGAGCTGACATGACTTCTTGTTTCAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580:ENSMUST00000100330:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(39.4=59.7),PF136371=Ank_4=PU(20.6=21.0)
A:
NA
C2:
PF127962=Ank_2=FE(28.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types