HsaINT0163636 @ hg19
Intron Retention
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61489359-61490995:+
Coord C1 exon
chr17:61489359-61489491
Coord A exon
chr17:61489492-61490903
Coord C2 exon
chr17:61490904-61490995
Length
1412 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTAGATCATGGGGCCATGATCGAGCACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTGGGGTGCCGGAACACTTCTGTTGTTGTCACTCTTCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTAGGAGAAGGGAAGAGGATGTTGGCCATCTGTGCCCAGGGGCCAGACTGGTCCAGTGGTCTGGCTGCCCTGGGTATTTGGTGTGAGTGTATATAGTTCCCCCTCCTCCCTGGCCCAATTATTGTCCAAGTGAACAGAGAGGCTCTTGGCCCAGGGAAAGCGCCATCTGAGCCATGGTCTGCAGTCCCCTGTGTCCAGAACCACGTGGTTCTCTACCATGTCCCTTGTAGCCTTAGCCAGGAGGCTGCTCTGGCCTTAAGCACCTCTCAGCACTGCCTCTGTTCCAGCCCCACTCTATCAGCATCCTGGATCTCTGCGCTGCCGTGAGCCTTTGCTTTCCCTTGCTCTGAATGTGCTTCAGACTCAAGTCCCTGCTGCCGCTGTCCCAGCTGCTCCCCAAGCCCACAGACCTATAGACGAGGGTTGGCTGATATGCTGGCTTTGTGCTGCCTGCCTCTCACTGCTGCTTTTTCCTTCTTTTTTTTTTTTTCACCTTCATCCATTTTTTTTTCCTCTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATTTCACCGCTGTCAGCATCAGGCGTGGTCTGATGGCTTGGTCAGCTTTGCCTTCTCCTCTTTGGTTTAGCCTGCATGAGTTCCCTACACCTCTAATCTTTTAATTTACTTCACCTTAAAAGAAGATTTTTTTTAATGACTGTTGTAGAGAATAACTTGAACTTTTGATAACTAACCTTGAAAAGCATAGTTTGTAAATAATTCAGGCATTTGTAAACTAATCAATTTAACCTTTTCTTTCTTTTTGTGGGTAAAGTCATCCTCAGTAATGTTGGTTTGTTTCACATCTGATTGACATTCGAACTGTGCTCCTGCTTCAAAGTGAATCCCGGGGAGTCCTAGTTGGTACTTATCATTTAAGGGAAACTTTAGAGTTATCAGTGGTTTCCCTTCTGCAAAGTACATATTTTAAAGTTAAGAGGCTAAACATCTGGGGGTTTTGAGTCCCAAATCCAAAATAAATTACCCTTTTTGGACTTTTCAAATCCTGTGGTAATGTTTAATATAAATCCTTCCTCCCAATTCCTTATTTAAAATAATTCCAAACTGAGCCATTGCTTGCCCACATGCAGCACGCAGGCTTTGCTGCCCTCGCGTGGGGCAGGCTCACATGGTTCAAGTATTCTTATTTTAAGGTGAATACAAATCCAATGCAGCTTCTTGGCAGTGGGAGTTACTAAAATACTCCCAGGTCTAAAAGATGAGGTACTAATTGTGGAGCAAGTTGTTCTCTCAGCAGAAATTCCCCTAGGGTATTTTTTTCACCTAGCTTCCTACCACCCTTACATTGTATGAGTTTTTTACCCATCATGCATCCTGTACACTACAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAGCCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-TANC2:NM_025185:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NA
C2:
PF134141=TPR_11=PU(17.4=38.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCCTGGTAGATCATGGG
R:
TTATAAAACATGTCCCCCTCTTCCA
Band lengths:
222-1634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)