GgaINT0143991 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2620060-2621629:+
Coord C1 exon
chr27:2620060-2620192
Coord A exon
chr27:2620193-2621537
Coord C2 exon
chr27:2621538-2621629
Length
1345 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
ATGCATCCTGTACACTGCAGGTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTTCAGTTCCTGGTGGACCACGGGGCCATGATTGAGCACGTCGACTACAGCGGGATGCGTCCCCTGGACAGGGCGGTGGGGTGCCGCAACACCTCGGTGGTCGTCACCCTCCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTAGGGCCTGGGGGACACTTGGTCAGCGCTGTGCGGGGGCACTCGGAGTGAGAACCCCGACCCGGAGGCAGCCTCAGCCCCACTGCTGCTTCGTACCCCAAAAGCAGCCCCGAGTCAGGAGTGCCGCGTTCTCTTGTTAAATTGGGATGTTTTATTGCTGTCGTATCACGTAGAGAAAGTGAATAAACAACTGTTTCTTTGGCAAGGTCTTTCCTCCGGTAATGCCTTTTCTATCTCTACTAGTCCGAGCCGACAGGCGTACTGTGTCCATGCATTGCTGTGAGCTGCTGCCTTCACTGCTCTGTATACGCTTCAGACCTCAGTGTTACCTGCACTGCGCCACGCAGCCGCTCACGTTGTGTTTTCCTGTGGAAGGGGATTTTGCTGGTGCATTGGCTTCTTTGCTGCCTGCCTCTCACAGCTGCTTTTTTCCTTTCTTTTTTTTCTTTTTTTTTTTTTTCACCTTCATCCATTTTTTTCCCCTCTCTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATCTCATTGCTGTCAGCATCAGCCTCGATCTGATAGCTTTGTCAGCCTTGCTTTCTCCTGTTTGATTTAGCCTGCATGCGTCCCCAACACCTCTAATCTTTTAATTTACCTCACCTTTGAATAATTTTTTTAAATGACTGTTGCAGAGAATAACTTGAACTCAAAAACTAACCAAAATGTACTGAATCTACTGATAGAAATAGCGGTGACTTATTCCTCCCCCACACTAATGAGCTGTCCCCGGATTTTGCCACCCCAGTATCAGTCAGATAACGATGCTCTGCATTGGGTCCCCTTGTGCTGTCCCACAGCACCTCCCTGCACAGAGCATCCCCAGCTCAGCACTGGTTTTTAGCTAGGATTTGCTACTACACCCGTATATATACCCATCAATTCACGAGCAAATTACGTACTGTTACTCTTGGCGTAACCGCTTGGATTTGCCCTTCAAACGCCTCTCACTCCCCCCACACTTTGCCCCACCCCAGTTCTGCAAACAGCACTGCCCTCTCGTGGAGATGGCTTCCAGCATTTCCCCACACGGCCGTGCTCATTAGTGCCAGCGTTAATGACTGACCGCCAAGGAAAAGCCATTGCAATGTGGATCCCGTTAATTTTAAGTGCAAGAGGAATTGTCAGCTCCATCACTGGGAGCTCTCTGCTCTTTGACCATGCCACAAGTTGTTCTCTCCAGCAGAAATTCCCACCCCAGGATATTTTTTCCACCCAGCTTCCTACCACCCTTGCATTGTATGAGTTTTTTACCCATCATGCATCCTGTACACTGCAG
Seq C2 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
ENSGALT00000000648fB40
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGTTCCTGGTGGACCAC
R:
TGTAAAACATGTCTCCCTCCTCCA
Band lengths:
223-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]