RnoINT0147548 @ rn6
Intron Retention
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94117459-94119077:+
Coord C1 exon
chr10:94117459-94117591
Coord A exon
chr10:94117592-94118985
Coord C2 exon
chr10:94118986-94119077
Length
1394 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATCGGGCAGTGGGTTGCAGGAACACGTCTGTTGTAGTAACTCTACTGAAGAAAGGAGCCAAAATAG
Seq A exon
GTAAGAGAGAGAGAGATGCTATTGACCATCTGTGCCCAGGGGCCAGTGGTCTAGCTTTCCTGGGTTTTTGGAGTGAATGTATGTAGTTCTCCCTCTGCCCTGGTCCAATTACTGCCCAAGTGAATGAAAGGCTACTGGCCCAGAGAGAGTACCATCTGATCTGAGCCATAGTCGTAAAGCCCTGTATCCAGAGTCACATGACTCTCTGCCCTGCCCTTTCTAGCTTTAGCCAGGAGGCTGTGCTGAGCTTATGCACATTTTAGTGCTGCCTGTGCACTAGCCCCACCCTGTGAGCATCCTGGCTCCCTGCAGTGCCATAAGCCTTTGCTTTCCTTTGCTCTCTGTGCTTCCCTCTCCAGCCCCTGCTGCTGCTCTCCCAGCTGCTCCCCCGCCCACACACTGTAGACAGGGTTGGCTGATGTGCTGGCTTTTGCTGCCTGCCTCTCACTGCTGCTTTTTCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACCTTCATCCATTTTTTTTTCCTTTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATTTCACCGCTGTCAGCATCAGGCGTGGTCTGATGGCTTGGTCAGCTTTGCCTTCTCCTCTTTGATTTAGCCTGCATGAGTTCCCCACACCTCTAATCTTTTAATTTACTTCACCTTAAAAGAAGATTTTTTAATGACTGTTGCAGAGAATAACTTGAACTTTTGATAACTAACCCTGAAACGCTTAGTTGGTAAATAATTCAGTCATCTGTAAACTAATCAATTTAACTTTATTCTTTTCTTTCATGAGTCAAGTAGTCTTGATGTTTGTTTCATATCTATTGACGTTAGAATTATGCTCCTGGTTCCAAGTGAATCCCAGGGAGTCCTATTTGGAACTTAGCTCTAAGGGAGCCTTTAGAGTACTTAAGGAGGGTTCCCTTCTACAGAATGCACACTTCAAAATTGAGTCTATGTGGGAGTTTGCCATCTCAGACAGAAAATAAATTATTCTTTTTTGGCTTTTTCTAATCATGTGGTAACCTTTAACCCTTTCTTCCAACTTCCTGATTTAAAACAATTTCAGACTAAGCCATTATATGCTCATGTGTACCACACAGGTATTTACTGCTCCCTGTGGCACAAGCTTGGACACCTCAGATATTCTTATTTTAAGGTGAACACAGACAAATCCGATGCAGCTTCTTGGCAATGGGAGTCACTAATACACTCCCAGGCCTAAAAGTGAGGCGATTACTTGGAGCAAGTTGTTCTCTCAGCAGAAATTCCCCAGGATATTTTTTTCACCCAGCTTCCTACCACCTTACATTGTATGAGTTCTTTACCCATCATGCATCCTGTACACTACAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840:ENSRNOT00000077280:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCCTGGTGGATCATGG
R:
TTATAAAACATGTCCCCCTCTTCCA
Band lengths:
222-1616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]