BtaINT0145027 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48396784-48398406:+
Coord C1 exon
chr19:48396784-48396916
Coord A exon
chr19:48396917-48398314
Coord C2 exon
chr19:48398315-48398406
Length
1398 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCACGGGGCCATGATCGAGCACGTGGACTACAGTGGAATGCGCCCTCTGGACAGGGCTGTGGGGTGCCGGAACACTTCTGTTGTTGTCACCCTTCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTAGGAGAAAGGAGGAAGGTGCTGGCCATCTGTGCCCAGCGGCCAGACTGGCCCAGTGGTCTGGCTGCCCTGGGCGTTCAGCGTGAACCTGTATAGTCTCCCCTCTGCCCGGCCCAGTTATTATCTGAGTGAACAGAAAGACTCTTGGCCCAGAGAAGAGCCCTGATCTACACTACCCTTTGTCCAAAGCCACGTGGTTATCTGCCATGCCCGAGTCGCCTTAGCCAGGAGGCTGCTCTGACCTTAAGTGCATCTCAGCGCTGTTGCCTCGGCAGCAGCCCCGCCCTGTGAGCATCCTGGATCCCTGTGATGCCGCGAGCCTTCGCTTTGCCCTGCTCTGTATGTGCTTCGGACCCTCGGGTCCCTGCGGCTGCTGCCCCTCCGCTGCCCCTCCCACGGACCCGTAGACGAGGGTTGGCTGATGTGCTGGCTTTTTTGCTGCCTGCCTCTCACTGCTGCTTTTTCCTTCTTTTTTTTTTTTTTTTTTCACCTTCATCCATTTTTTTTTTCCTCTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATTTCACCGCTGTCAGCATCAGGCGTGGTCTGATGGCTTGGTCAGCTTTGCCTTCTCCTCTTTGATTTAGCCTGCATGAGTCCCCAACACCTCTAATCTTTTAATTTACTTCACCTTAAAAGAAGATATTTTTTTAAATGACTGTTGTAGAGAATAACTTGAACTTTTGATAACTAACCCAGAAAAGCTTAGTTGGTAAATAGTTCAGGCATCTGTAAACTAATCGAGTTAACCTTTTCTTTCTCTTTGTGGGTAGAGTGGTCCTCTGTCACGATGGCTTGTTTCACACTGAAACAGTTCAGTGTGAATCCCAGGGGTCCTATTCGGTACTTACAAATTAAGGGAGCCTTTAGAAGTGTTCATGGTTTCCCTTCTGCAAAGTACATGCTTAAAAATTAAAGAGACTGAACAGCTGGGGGTTTTGAGTCCCAGATTACCCAAAATAAATTACCCTTTTTGGATTTTTTAAAATCTTACAGTGACATTTAATGTAAACCCTTTTCTCCCAAGTTCCTTATTTAAAGTAACGCCAGACTAAGCATCGCCTGCCTGAATACAACATGCAGGCTCTGCTGCCCTCCGATGGTGCAGACTCTGACCGTTCAGAGATTCTTATTTTAAGGTGAATACAAATCCAACGCGGCTTCTTGGCAGTGGGAGACGCTGAGACACTCCCAGTTCTAAAAGACGAGGCCAGTGTTGTGGAGCAAGTTGTTCTCTCAGCAGAAATCCCCCCCAGGGTGTTTTTTTCACCTAGCTTCCTACCACCCTTACATTGTATGAGTTTTTTACCCATCATGCATCCTGTACACTACAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249:ENSBTAT00000005565:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCCTGGTGGATCACG
R:
TTATAAAACATGTCCCCCTCTTCCA
Band lengths:
222-1620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development