MmuINT0156871 @ mm10
Intron Retention
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105913357-105914983:+
Coord C1 exon
chr11:105913357-105913489
Coord A exon
chr11:105913490-105914891
Coord C2 exon
chr11:105914892-105914983
Length
1402 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTAGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATAGGGCAGTGGGTTGCCGGAACACGTCTGTTGTAGTAACTCTACTGAAAAAAGGAGCCAAAATAG
Seq A exon
GTAAGAGAAAGAGAGATGATATTGACCATCTGTGCCCAGGGGCCAGTGGTCTGGCTTTCCTGGGTTTTTTGGAGTGAATGTATCTAGTTCTCCCTCTGCCCTGGTCCAATTACTGCCCAAGTGAACAAAAGGCTACTGGCCCAGAGAGAGTACATCTGAGCCATAGTCATGAAACCCTGTATCCAGAGTCACATGACTCTCTGCCCTGCCCTTTGTAGCTTGAGCCAGGAGGCTGCGCTGAGCTTATGCACATCTTCGCGCTGCCTGTGCACTGGCCCCACCCTTTGAGCATCCTGGTTCCCTGCAGCACCATAAGCCTTTGCTTTCCTTTGCTCTCCGTGCTTCACTCTCCAGCCCCTGCCGCTGCTCTCCCAGCTGCTCCCCCACCCACACACTGTAGACAGGGTTGCTGATGTGCTGGCTTTTGCTGCCTGCCTCTCACTGCTGCTTTTCCTTCTTTTTTTGTTTTTTTTTTTTCTTTTTTTTTTTTTTCACCTTCATCCATTTTTTTTTCCTTTCCTACAACTTTTTGTTTTCTCCTTTCTTTGAAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTATATTTCACCGCTGTCAGCATCAGGCGTGGTCTGATGGCTTGGTCAGCTTTGCCTTCTCCTCTTTGATTTAGCCTGCATGAGTTCCCTACACCTCTAATCTTTTAATTTACTTCACCTTAAAAGAAGATTTTTTAATGACTGTTGCAGAGAATAACTTGAACTTTTTGATAACTAACCCTGAAAAGTTTAGTTGGTAAATAATCCAGTCATCTGTAAACTAATCAATTTAACTATTCTTTTCTCTCGTGAGTGAAGTAGTCTTCTTAATGTTTATTTCATATCTGTTGACATTAGAATTATGCCCCTGGTTCCAAGTGAATCCTAGGGAGTCCTTTTTGGTACTTAGCTCTAAGGAGCCTTTAGAGCACTTACGGAGGGTCCCCTTCTACAGAGTGCACACTTCAAAATTGATTCTACGTGGGAGTGTTCTATCTCAGACAGAAAATAAATTATTCTTTTTTGGCTTTTTCTAGTCTCATGGTAACCTTTAGTATAAATTCTTTCTTCCAACTTCCTGATTTAAAATCATTTCAGACTAAGCCATTATGTGCTCACGTGTACCACACAGGTGTTACTGTCTCCTGTGGCACGAGCTTGGACACTTCAGATATTCTTATTTTAAGGTGAATACAAACAAATCAAATGCAGCTTCTCGGCAATGGGAGTCACTGAATACTCCCAGGTCTAGAAGATGAGGTAATTATTGTGGACAAGTTGTTCTCTCAGCAGAAATTCCCCAGGATATTTTTTTCCACCCAGCTTCCTACCACCTTACATTGTATGAGTTCTTTACCCATCATGCATCCTGTACACTACAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580:ENSMUST00000100330:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(48.5=35.6)
A:
NA
C2:
PF134141=TPR_11=PU(18.8=37.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCCTGGTAGATCATGGG
R:
TTATAAAACATGTCCCCCTCTTCCA
Band lengths:
222-1624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types