HsaINT0174153 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39130248-39130839:+
Coord C1 exon
chr3:39130248-39130358
Coord A exon
chr3:39130359-39130700
Coord C2 exon
chr3:39130701-39130839
Length
342 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
3' ss Seq
TATTTACTGTTTGCACTAAGGCA
3' ss Score
4.03
Exon sequences
Seq C1 exon
CCCGAGAAGGCCCTGGAGGTCTATGATGAGGCCTATAGACAGAACCCACATGACGCCTCCCTGGCCAGCAGAATTGGGCACGCTTATGTGAAGGCCCACCAGTATACTGAG
Seq A exon
GTCAGGCTGGGCTAGGGTGTGAAGGGGCAGGGAGGGCCAGCCCAGCAGGGAAGGAGGAGGACGGTACATGACTGGGGAGCTCTGGGTGGGAGGAGAGTGGCTGACTTTTCACTCAGCTCCTTGCTGAATGGGGTGCCAAGGGGAGAACTCAGCAACTCTCTGCTGCTGACCACACCTGCTTAAGCTGAGGGTTACACCCTGTGCCAGCTGGGAGGAGTGCCTTTTCACTTTAGGCTATGTTCTGGAGGGGCACACTGGTGTGATGGCTGCTGAGGGGAACATGGTGTCGGGCACTGAAGGGCAGAACCAGGCCAGAGGCTAATATTTACTGTTTGCACTAAG
Seq C2 exon
GCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGACAGGACTTTCTGTGCTGCGATCTGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGTTTTGAAGCAGGCACTGGAACATGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.6=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCCCTGGAGGTC
R:
ATGTCATGTTCCAGTGCCTGC
Band lengths:
246-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains