RnoINT0157547 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128646862-128647434:+
Coord C1 exon
chr8:128646862-128646972
Coord A exon
chr8:128646973-128647295
Coord C2 exon
chr8:128647296-128647434
Length
323 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TATGTCCTGTTTGCGCTAAGGCC
3' ss Score
5.64
Exon sequences
Seq C1 exon
CCTGAGAAGGCCCTGGAGGTGTATGACGAGGCCTACAGAAAGAACCCTCACGACGCCTCCTTGGTCAGCAGGATTGGACAAGCCTACGTGAAGACCCACCAGTATGCCAAG
Seq A exon
GTGAGGCTGCCCTGGGGAAGGGCCAGCCAGGCAGAGAAGGAAGGAGAGCCCATTCGTTGGGGCTGTAGATGGGAAGGGACAGAGTATTTCTACCCTAGCAGCTACCTGCTGAGGTTGTGACCAGGGGTGAGCTCAGTCGGTCTACACTGCAGCAGGCTCCACTGAGGCCTGAGCCCCGTTGAGGGTTGAGGCAAGGGTGGGGCATTCATCTTGGGCATCTGTGTGCAAAGGGACAGTCTAATGCAGTGGCTGCTGAAGGGACATGGTATTAGCCACCCCCATGCAGAGCCAAACTGAGGCCCATATGTCCTGTTTGCGCTAAG
Seq C2 exon
GCCATTAATTACTACGAGGCTGCCCAGAAGATCAGCGGGCAGGACTTCCTGTGCTGCGAGCTGGCCGAGCTGCTCCTGAAGCTGAAGAAATACCACAAGGCAGAGAAGGTGCTGAAGCAGGCCTTGGAGCGAGACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(55.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(18.5=25.5),PF134141=TPR_11=PU(40.8=61.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGGCCCTGGAGGTGTA
R:
GAGTCTCGCTCCAAGGCCT
Band lengths:
246-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]